Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Gm27742-201ENSMUST00000184667 60 ntBASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ube3bQ9ES34 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Gm15794-201ENSMUST00000120182 631 ntBASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ube3bQ9ES34 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Ube3bQ9ES34 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Otx2os1-206ENSMUST00000228153 787 ntBASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ube3bQ9ES34 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Olfr129-201ENSMUST00000122318 993 ntBASIC19.94■□□□□ 0.78
Ube3bQ9ES34 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ube3bQ9ES34 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Ube3bQ9ES34 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 AC125350.1-201ENSMUST00000225115 903 ntBASIC19.92■□□□□ 0.78
Ube3bQ9ES34 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ube3bQ9ES34 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ube3bQ9ES34 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ube3bQ9ES34 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms