Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.19■□□□□ 0.5
Trim54Q9ERP3 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim54Q9ERP3 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.17■□□□□ 0.5
Trim54Q9ERP3 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 AC133598.3-202ENSMUST00000224219 531 ntBASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim54Q9ERP3 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Gm24589-201ENSMUST00000116692 94 ntBASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim54Q9ERP3 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim54Q9ERP3 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Trim54Q9ERP3 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim54Q9ERP3 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim54Q9ERP3 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim54Q9ERP3 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Gm18115-201ENSMUST00000221209 621 ntBASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.14■□□□□ 0.49
Trim54Q9ERP3 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms