Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lima1Q9ERG0 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lima1Q9ERG0 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Gm11643-201ENSMUST00000119578 864 ntBASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Trmt13-210ENSMUST00000198454 880 ntBASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lima1Q9ERG0 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Lima1Q9ERG0 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Lima1Q9ERG0 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms