Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Cdc40Q9DC48 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Cdc40Q9DC48 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Gm18101-201ENSMUST00000215769 548 ntBASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Cdc40Q9DC48 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Gm7638-201ENSMUST00000121348 967 ntBASIC15.6■□□□□ 0.09
Cdc40Q9DC48 AA414768-201ENSMUST00000121924 1257 ntBASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Gm22697-201ENSMUST00000175194 63 ntBASIC15.6■□□□□ 0.09
Cdc40Q9DC48 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Gm10819-201ENSMUST00000099988 561 ntBASIC15.6■□□□□ 0.09
Cdc40Q9DC48 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Cdc40Q9DC48 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Gm6728-201ENSMUST00000178117 1065 ntBASIC15.59■□□□□ 0.09
Cdc40Q9DC48 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Cdc40Q9DC48 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
Cdc40Q9DC48 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Cdc40Q9DC48 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Cdc40Q9DC48 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms