Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28aQ8CEI3 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28aQ8CEI3 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Ccdc28aQ8CEI3 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28aQ8CEI3 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc28aQ8CEI3 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc28aQ8CEI3 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc28aQ8CEI3 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc28aQ8CEI3 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Gm12382-201ENSMUST00000122005 922 ntBASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc28aQ8CEI3 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Gm24841-201ENSMUST00000158676 357 ntBASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Gm37179-201ENSMUST00000194862 823 ntBASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc28aQ8CEI3 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Gm10517-202ENSMUST00000192970 758 ntBASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Ccdc28aQ8CEI3 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Gm37292-201ENSMUST00000192062 758 ntBASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Dancr-204ENSMUST00000132389 2347 ntBASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc28aQ8CEI3 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC17.72■□□□□ 0.43
Ccdc28aQ8CEI3 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Ccdc28aQ8CEI3 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc28aQ8CEI3 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc28aQ8CEI3 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ccdc28aQ8CEI3 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms