Protein–RNA interactions for Protein: Q8CCH2

Nhlrc3, NHL repeat-containing protein 3, mousemouse

Predictions only

Length 347 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nhlrc3Q8CCH2 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Gm24841-201ENSMUST00000158676 357 ntBASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nhlrc3Q8CCH2 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nhlrc3Q8CCH2 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nhlrc3Q8CCH2 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nhlrc3Q8CCH2 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Nhlrc3Q8CCH2 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nhlrc3Q8CCH2 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nhlrc3Q8CCH2 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Nhlrc3Q8CCH2 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nhlrc3Q8CCH2 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Nhlrc3Q8CCH2 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms