Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp49Q6P9L4 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp49Q6P9L4 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp49Q6P9L4 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp49Q6P9L4 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Usp49Q6P9L4 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp49Q6P9L4 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp49Q6P9L4 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.83■□□□□ 0.61
Usp49Q6P9L4 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp49Q6P9L4 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp49Q6P9L4 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.83■□□□□ 0.6
Usp49Q6P9L4 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp49Q6P9L4 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.83■□□□□ 0.6
Usp49Q6P9L4 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp49Q6P9L4 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp49Q6P9L4 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp49Q6P9L4 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp49Q6P9L4 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp49Q6P9L4 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp49Q6P9L4 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.82■□□□□ 0.6
Usp49Q6P9L4 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Gm13836-201ENSMUST00000121159 501 ntBASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp49Q6P9L4 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Gm13559-201ENSMUST00000120476 863 ntBASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp49Q6P9L4 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp49Q6P9L4 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms