Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
Smchd1Q6P5D8 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.43■□□□□ 0.54
Smchd1Q6P5D8 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Gm10052-201ENSMUST00000168019 960 ntBASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Gm7729-201ENSMUST00000050143 801 ntBASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Gm7153-201ENSMUST00000117092 455 ntBASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Mir3081-201ENSMUST00000175305 84 ntBASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
Smchd1Q6P5D8 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Smchd1Q6P5D8 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 AC153794.1-201ENSMUST00000169148 126 ntBASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Gm29707-201ENSMUST00000196325 491 ntBASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smchd1Q6P5D8 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Smchd1Q6P5D8 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Smchd1Q6P5D8 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Smchd1Q6P5D8 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms