Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Gm8969-201ENSMUST00000199694 526 ntBASIC15.66■□□□□ 0.1
ShhQ62226 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC15.66■□□□□ 0.1
ShhQ62226 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
ShhQ62226 Gm15635-204ENSMUST00000208024 2539 ntBASIC15.66■□□□□ 0.1
ShhQ62226 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Gm43272-201ENSMUST00000200599 1584 ntBASIC15.66■□□□□ 0.1
ShhQ62226 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ShhQ62226 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
ShhQ62226 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
ShhQ62226 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Gm9013-201ENSMUST00000132939 882 ntBASIC15.65■□□□□ 0.1
ShhQ62226 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
ShhQ62226 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
ShhQ62226 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Gm9694-201ENSMUST00000193347 1189 ntBASIC15.65■□□□□ 0.1
ShhQ62226 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC15.65■□□□□ 0.1
ShhQ62226 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC15.65■□□□□ 0.1
ShhQ62226 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ShhQ62226 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
ShhQ62226 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Gm13474-201ENSMUST00000122466 815 ntBASIC15.64■□□□□ 0.09
ShhQ62226 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.64■□□□□ 0.09
ShhQ62226 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Gm29518-201ENSMUST00000190858 372 ntBASIC15.64■□□□□ 0.09
ShhQ62226 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
ShhQ62226 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Gm21559-201ENSMUST00000220638 855 ntBASIC15.64■□□□□ 0.09
ShhQ62226 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
ShhQ62226 Gm8587-201ENSMUST00000076538 843 ntBASIC15.64■□□□□ 0.09
ShhQ62226 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ShhQ62226 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC15.64■□□□□ 0.09
ShhQ62226 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC15.64■□□□□ 0.09
ShhQ62226 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
ShhQ62226 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
ShhQ62226 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
ShhQ62226 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
ShhQ62226 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
ShhQ62226 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC15.63■□□□□ 0.09
ShhQ62226 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ShhQ62226 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ShhQ62226 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ShhQ62226 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
ShhQ62226 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ShhQ62226 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ShhQ62226 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ShhQ62226 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ShhQ62226 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ShhQ62226 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms