Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim40Q3UWA4 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Gm7290-201ENSMUST00000104990 617 ntBASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Gm12918-201ENSMUST00000120234 636 ntBASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Gm15710-201ENSMUST00000121821 636 ntBASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Gm5075-201ENSMUST00000196916 622 ntBASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim40Q3UWA4 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Trim40Q3UWA4 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Zfp783-201ENSMUST00000095946 670 ntBASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trim40Q3UWA4 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Mir2861-201ENSMUST00000175539 82 ntBASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Gm7291-201ENSMUST00000199147 382 ntBASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trim40Q3UWA4 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms