Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.78■□□□□ 0.44
Shmt1P50431 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Shmt1P50431 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Shmt1P50431 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Shmt1P50431 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Shmt1P50431 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shmt1P50431 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.77■□□□□ 0.44
Shmt1P50431 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC17.77■□□□□ 0.44
Shmt1P50431 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.77■□□□□ 0.44
Shmt1P50431 Gm9013-201ENSMUST00000132939 882 ntBASIC17.77■□□□□ 0.44
Shmt1P50431 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Shmt1P50431 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Shmt1P50431 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Shmt1P50431 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Shmt1P50431 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Shmt1P50431 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.77■□□□□ 0.43
Shmt1P50431 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Shmt1P50431 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.77■□□□□ 0.43
Shmt1P50431 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Shmt1P50431 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Shmt1P50431 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Shmt1P50431 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.76■□□□□ 0.43
Shmt1P50431 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Shmt1P50431 Gm11336-201ENSMUST00000118168 334 ntBASIC17.76■□□□□ 0.43
Shmt1P50431 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.76■□□□□ 0.43
Shmt1P50431 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.76■□□□□ 0.43
Shmt1P50431 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Shmt1P50431 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.75■□□□□ 0.43
Shmt1P50431 Gm29518-201ENSMUST00000190858 372 ntBASIC17.75■□□□□ 0.43
Shmt1P50431 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Shmt1P50431 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.75■□□□□ 0.43
Shmt1P50431 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shmt1P50431 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Shmt1P50431 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Shmt1P50431 Mir770-201ENSMUST00000103252 94 ntBASIC17.74■□□□□ 0.43
Shmt1P50431 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Gm25016-201ENSMUST00000158399 131 ntBASIC17.74■□□□□ 0.43
Shmt1P50431 Gm44450-201ENSMUST00000199528 114 ntBASIC17.74■□□□□ 0.43
Shmt1P50431 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Shmt1P50431 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shmt1P50431 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC17.73■□□□□ 0.43
Shmt1P50431 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms