Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
RaraP11416 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC18.2■□□□□ 0.5
RaraP11416 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.2■□□□□ 0.5
RaraP11416 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.2■□□□□ 0.5
RaraP11416 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RaraP11416 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
RaraP11416 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RaraP11416 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RaraP11416 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RaraP11416 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RaraP11416 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RaraP11416 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RaraP11416 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
RaraP11416 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
RaraP11416 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RaraP11416 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RaraP11416 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RaraP11416 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RaraP11416 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RaraP11416 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RaraP11416 Gm38027-201ENSMUST00000192315 235 ntBASIC18.18■□□□□ 0.5
RaraP11416 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.18■□□□□ 0.5
RaraP11416 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.18■□□□□ 0.5
RaraP11416 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RaraP11416 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RaraP11416 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
RaraP11416 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RaraP11416 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RaraP11416 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.17■□□□□ 0.5
RaraP11416 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
RaraP11416 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.17■□□□□ 0.5
RaraP11416 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
RaraP11416 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
RaraP11416 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RaraP11416 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.17■□□□□ 0.5
RaraP11416 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RaraP11416 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RaraP11416 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.17■□□□□ 0.5
RaraP11416 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.17■□□□□ 0.5
RaraP11416 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RaraP11416 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RaraP11416 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RaraP11416 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.16■□□□□ 0.5
RaraP11416 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RaraP11416 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.16■□□□□ 0.5
RaraP11416 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
RaraP11416 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RaraP11416 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.15■□□□□ 0.5
RaraP11416 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.15■□□□□ 0.5
RaraP11416 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.15■□□□□ 0.5
RaraP11416 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RaraP11416 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RaraP11416 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RaraP11416 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.5
RaraP11416 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.14■□□□□ 0.5
RaraP11416 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
RaraP11416 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
RaraP11416 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.14■□□□□ 0.49
RaraP11416 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
RaraP11416 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RaraP11416 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RaraP11416 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RaraP11416 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
RaraP11416 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RaraP11416 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RaraP11416 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RaraP11416 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms