Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Mir8098-201ENSMUST00000184011 137 ntBASIC20.03■□□□□ 0.8
Col3a1P08121 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC20.03■□□□□ 0.8
Col3a1P08121 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Col3a1P08121 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col3a1P08121 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Col3a1P08121 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC20.02■□□□□ 0.8
Col3a1P08121 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col3a1P08121 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20.02■□□□□ 0.8
Col3a1P08121 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col3a1P08121 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col3a1P08121 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC20.02■□□□□ 0.8
Col3a1P08121 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col3a1P08121 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col3a1P08121 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col3a1P08121 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Col3a1P08121 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col3a1P08121 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col3a1P08121 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col3a1P08121 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col3a1P08121 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col3a1P08121 AC108846.1-201ENSMUST00000214531 513 ntBASIC20.01■□□□□ 0.79
Col3a1P08121 AC159301.1-201ENSMUST00000225130 1182 ntBASIC20.01■□□□□ 0.79
Col3a1P08121 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col3a1P08121 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Col3a1P08121 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col3a1P08121 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col3a1P08121 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Col3a1P08121 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col3a1P08121 Gm43338-201ENSMUST00000198617 2223 ntBASIC20.01■□□□□ 0.79
Col3a1P08121 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Col3a1P08121 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC20■□□□□ 0.79
Col3a1P08121 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC20■□□□□ 0.79
Col3a1P08121 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC20■□□□□ 0.79
Col3a1P08121 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Gm43294-201ENSMUST00000202850 2490 ntBASIC20■□□□□ 0.79
Col3a1P08121 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col3a1P08121 Gm15165-201ENSMUST00000118140 502 ntBASIC19.99■□□□□ 0.79
Col3a1P08121 Gm28659-201ENSMUST00000188013 759 ntBASIC19.99■□□□□ 0.79
Col3a1P08121 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.99■□□□□ 0.79
Col3a1P08121 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
Col3a1P08121 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Col3a1P08121 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Gm12644-201ENSMUST00000119935 606 ntBASIC19.99■□□□□ 0.79
Col3a1P08121 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC19.99■□□□□ 0.79
Col3a1P08121 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC19.99■□□□□ 0.79
Col3a1P08121 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC19.99■□□□□ 0.79
Col3a1P08121 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.99■□□□□ 0.79
Col3a1P08121 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col3a1P08121 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Col3a1P08121 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Gm7935-201ENSMUST00000100555 1278 ntBASIC19.98■□□□□ 0.79
Col3a1P08121 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC19.98■□□□□ 0.79
Col3a1P08121 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC19.98■□□□□ 0.79
Col3a1P08121 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col3a1P08121 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col3a1P08121 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col3a1P08121 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col3a1P08121 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col3a1P08121 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col3a1P08121 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col3a1P08121 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col3a1P08121 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
Col3a1P08121 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.97■□□□□ 0.79
Col3a1P08121 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col3a1P08121 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms