Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Gm6139-201ENSMUST00000079261 882 ntBASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim55G3X8Y1 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim55G3X8Y1 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim55G3X8Y1 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim55G3X8Y1 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.33■□□□□ 0.37
Trim55G3X8Y1 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim55G3X8Y1 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim55G3X8Y1 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim55G3X8Y1 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Gm43137-201ENSMUST00000198052 594 ntBASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim55G3X8Y1 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Idnk-204ENSMUST00000226010 1898 ntBASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim55G3X8Y1 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Gm8309-201ENSMUST00000206627 1448 ntBASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim55G3X8Y1 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms