Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Brf1Q8CFK2 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Gm45058-201ENSMUST00000205810 766 ntBASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Gm9987-201ENSMUST00000069768 567 ntBASIC20.35■□□□□ 0.85
Brf1Q8CFK2 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Brf1Q8CFK2 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Gm13474-201ENSMUST00000122466 815 ntBASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Brf1Q8CFK2 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.33■□□□□ 0.85
Brf1Q8CFK2 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Gm10566-201ENSMUST00000086739 996 ntBASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC20.33■□□□□ 0.85
Brf1Q8CFK2 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Brf1Q8CFK2 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Brf1Q8CFK2 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Brf1Q8CFK2 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
Brf1Q8CFK2 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Brf1Q8CFK2 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Brf1Q8CFK2 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Brf1Q8CFK2 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Gm7213-201ENSMUST00000215977 950 ntBASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Gm9954-202ENSMUST00000198686 4725 ntBASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Brf1Q8CFK2 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms