Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp49Q6P9L4 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.9■□□□□ 0.62
Usp49Q6P9L4 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usp49Q6P9L4 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Usp49Q6P9L4 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp49Q6P9L4 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.88■□□□□ 0.61
Usp49Q6P9L4 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Gm18958-201ENSMUST00000174258 762 ntBASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp49Q6P9L4 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Gm11539-201ENSMUST00000119837 557 ntBASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Gm13436-201ENSMUST00000120418 567 ntBASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Gm7370-201ENSMUST00000219471 767 ntBASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp49Q6P9L4 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Gm27463-201ENSMUST00000183569 57 ntBASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Gm30025-201ENSMUST00000218555 728 ntBASIC18.85■□□□□ 0.61
Usp49Q6P9L4 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms