Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb4Q6P8W9 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb4Q6P8W9 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Hmgb4Q6P8W9 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Gm27704-201ENSMUST00000185094 107 ntBASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Gm29518-201ENSMUST00000190858 372 ntBASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Gm10566-201ENSMUST00000086739 996 ntBASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb4Q6P8W9 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb4Q6P8W9 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Gm9013-201ENSMUST00000132939 882 ntBASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.62■□□□□ 0.41
Hmgb4Q6P8W9 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Gm17808-201ENSMUST00000200859 894 ntBASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
Hmgb4Q6P8W9 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb4Q6P8W9 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms