Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CtcfQ61164 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CtcfQ61164 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CtcfQ61164 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Gm12441-201ENSMUST00000121806 588 ntBASIC18.57■□□□□ 0.56
CtcfQ61164 Gm10517-202ENSMUST00000192970 758 ntBASIC18.57■□□□□ 0.56
CtcfQ61164 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.57■□□□□ 0.56
CtcfQ61164 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CtcfQ61164 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CtcfQ61164 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CtcfQ61164 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.56■□□□□ 0.56
CtcfQ61164 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CtcfQ61164 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Gm43183-201ENSMUST00000200632 547 ntBASIC18.56■□□□□ 0.56
CtcfQ61164 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CtcfQ61164 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CtcfQ61164 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CtcfQ61164 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CtcfQ61164 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CtcfQ61164 Trmt13-210ENSMUST00000198454 880 ntBASIC18.55■□□□□ 0.56
CtcfQ61164 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CtcfQ61164 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CtcfQ61164 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.54■□□□□ 0.56
CtcfQ61164 Gm12382-201ENSMUST00000122005 922 ntBASIC18.54■□□□□ 0.56
CtcfQ61164 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.54■□□□□ 0.56
CtcfQ61164 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.54■□□□□ 0.56
CtcfQ61164 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
CtcfQ61164 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CtcfQ61164 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CtcfQ61164 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
CtcfQ61164 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC18.53■□□□□ 0.56
CtcfQ61164 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CtcfQ61164 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.53■□□□□ 0.56
CtcfQ61164 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.53■□□□□ 0.56
CtcfQ61164 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.53■□□□□ 0.56
CtcfQ61164 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.53■□□□□ 0.56
CtcfQ61164 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CtcfQ61164 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms