Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp28Q5I043 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC19.17■□□□□ 0.66
Usp28Q5I043 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.17■□□□□ 0.66
Usp28Q5I043 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp28Q5I043 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Usp28Q5I043 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Usp28Q5I043 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp28Q5I043 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
Usp28Q5I043 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp28Q5I043 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Usp28Q5I043 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp28Q5I043 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp28Q5I043 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Mir1199-201ENSMUST00000117015 119 ntBASIC19.16■□□□□ 0.66
Usp28Q5I043 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Usp28Q5I043 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp28Q5I043 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp28Q5I043 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Usp28Q5I043 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp28Q5I043 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp28Q5I043 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp28Q5I043 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp28Q5I043 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Usp28Q5I043 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp28Q5I043 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp28Q5I043 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp28Q5I043 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.15■□□□□ 0.66
Usp28Q5I043 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp28Q5I043 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp28Q5I043 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Usp28Q5I043 Gm45203-201ENSMUST00000206384 1831 ntBASIC19.14■□□□□ 0.65
Usp28Q5I043 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Il3ra-202ENSMUST00000223589 738 ntBASIC19.14■□□□□ 0.65
Usp28Q5I043 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Gm42918-201ENSMUST00000199249 1580 ntBASIC19.14■□□□□ 0.65
Usp28Q5I043 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Usp28Q5I043 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp28Q5I043 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.14■□□□□ 0.65
Usp28Q5I043 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp28Q5I043 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Usp28Q5I043 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp28Q5I043 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.13■□□□□ 0.65
Usp28Q5I043 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp28Q5I043 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp28Q5I043 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp28Q5I043 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Usp28Q5I043 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp28Q5I043 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp28Q5I043 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Usp28Q5I043 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp28Q5I043 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Dancr-204ENSMUST00000132389 2347 ntBASIC19.12■□□□□ 0.65
Usp28Q5I043 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Usp28Q5I043 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.12■□□□□ 0.65
Usp28Q5I043 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.12■□□□□ 0.65
Usp28Q5I043 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp28Q5I043 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp28Q5I043 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp28Q5I043 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp28Q5I043 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp28Q5I043 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.11■□□□□ 0.65
Usp28Q5I043 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms