Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Upf3aQ3ULJ3 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.71■□□□□ 0.43
Upf3aQ3ULJ3 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Gm13312-201ENSMUST00000119631 718 ntBASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Gm11452-201ENSMUST00000122376 690 ntBASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Gm10052-201ENSMUST00000168019 960 ntBASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Gm7729-201ENSMUST00000050143 801 ntBASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Upf3aQ3ULJ3 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Upf3aQ3ULJ3 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Gm12644-201ENSMUST00000119935 606 ntBASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Rprl3-201ENSMUST00000157400 290 ntBASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 AW822252-206ENSMUST00000208904 237 ntBASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Gm43182-201ENSMUST00000199476 2528 ntBASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Upf3aQ3ULJ3 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Upf3aQ3ULJ3 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3aQ3ULJ3 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3aQ3ULJ3 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Upf3aQ3ULJ3 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.66■□□□□ 0.42
Upf3aQ3ULJ3 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms