Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Limch1Q3UH68 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Gm23634-201ENSMUST00000175071 91 ntBASIC19.83■□□□□ 0.77
Limch1Q3UH68 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.83■□□□□ 0.77
Limch1Q3UH68 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Limch1Q3UH68 Gm18032-201ENSMUST00000222541 538 ntBASIC19.83■□□□□ 0.77
Limch1Q3UH68 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Limch1Q3UH68 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC19.82■□□□□ 0.76
Limch1Q3UH68 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Limch1Q3UH68 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Gm10013-201ENSMUST00000106074 672 ntBASIC19.81■□□□□ 0.76
Limch1Q3UH68 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Gm38027-201ENSMUST00000192315 235 ntBASIC19.81■□□□□ 0.76
Limch1Q3UH68 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Limch1Q3UH68 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.8■□□□□ 0.76
Limch1Q3UH68 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Gm43353-201ENSMUST00000199224 1295 ntBASIC19.8■□□□□ 0.76
Limch1Q3UH68 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC19.8■□□□□ 0.76
Limch1Q3UH68 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Limch1Q3UH68 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Limch1Q3UH68 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.79■□□□□ 0.76
Limch1Q3UH68 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Limch1Q3UH68 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms