Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddb1Q3U1J4 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Gm14140-201ENSMUST00000119999 995 ntBASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Gm43935-201ENSMUST00000203569 1050 ntBASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Gm7506-201ENSMUST00000207758 815 ntBASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddb1Q3U1J4 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddb1Q3U1J4 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 AV026068-213ENSMUST00000223675 1171 ntBASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ddb1Q3U1J4 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ddb1Q3U1J4 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Gm9727-201ENSMUST00000161387 555 ntBASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 AC127349.1-201ENSMUST00000224590 266 ntBASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddb1Q3U1J4 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Gm10576-201ENSMUST00000191927 825 ntBASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC21.38■■□□□ 1.01
Ddb1Q3U1J4 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Gm6089-201ENSMUST00000197666 938 ntBASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ddb1Q3U1J4 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms