Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ptchd3Q0EEE2 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ptchd3Q0EEE2 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ptchd3Q0EEE2 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Gm27275-201ENSMUST00000184318 272 ntBASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ptchd3Q0EEE2 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Gm20049-201ENSMUST00000219950 730 ntBASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ptchd3Q0EEE2 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Gm11249-201ENSMUST00000117071 859 ntBASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Gm13401-201ENSMUST00000117074 291 ntBASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 CT025689.6-201ENSMUST00000224991 1104 ntBASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ptchd3Q0EEE2 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ptchd3Q0EEE2 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ptchd3Q0EEE2 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC16.27■□□□□ 0.2
Ptchd3Q0EEE2 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ptchd3Q0EEE2 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms