Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Chd3B1AR17 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Chd3B1AR17 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Chd3B1AR17 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Chd3B1AR17 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Chd3B1AR17 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Chd3B1AR17 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Chd3B1AR17 Gm15794-201ENSMUST00000120182 631 ntBASIC16.49■□□□□ 0.23
Chd3B1AR17 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Chd3B1AR17 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Chd3B1AR17 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Chd3B1AR17 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 Gm45203-201ENSMUST00000206384 1831 ntBASIC16.48■□□□□ 0.23
Chd3B1AR17 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 Zkscan4-202ENSMUST00000225845 1506 ntBASIC16.48■□□□□ 0.23
Chd3B1AR17 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.48■□□□□ 0.23
Chd3B1AR17 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC16.48■□□□□ 0.23
Chd3B1AR17 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC16.48■□□□□ 0.23
Chd3B1AR17 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 Zfp264-201ENSMUST00000208656 1563 ntBASIC16.48■□□□□ 0.23
Chd3B1AR17 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Chd3B1AR17 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.48■□□□□ 0.23
Chd3B1AR17 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Chd3B1AR17 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC16.48■□□□□ 0.23
Chd3B1AR17 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chd3B1AR17 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chd3B1AR17 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chd3B1AR17 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chd3B1AR17 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chd3B1AR17 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chd3B1AR17 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Umpk-ps-201ENSMUST00000211897 827 ntBASIC16.47■□□□□ 0.23
Chd3B1AR17 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chd3B1AR17 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC16.47■□□□□ 0.23
Chd3B1AR17 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chd3B1AR17 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.46■□□□□ 0.23
Chd3B1AR17 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC16.46■□□□□ 0.23
Chd3B1AR17 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Chd3B1AR17 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Chd3B1AR17 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chd3B1AR17 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Chd3B1AR17 Gm25925-201ENSMUST00000158314 306 ntBASIC16.46■□□□□ 0.22
Chd3B1AR17 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Chd3B1AR17 Gm45328-201ENSMUST00000210942 917 ntBASIC16.46■□□□□ 0.22
Chd3B1AR17 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Chd3B1AR17 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Chd3B1AR17 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC16.45■□□□□ 0.22
Chd3B1AR17 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
Chd3B1AR17 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
Chd3B1AR17 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC16.45■□□□□ 0.22
Chd3B1AR17 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC16.45■□□□□ 0.22
Chd3B1AR17 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Chd3B1AR17 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms