Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm23787-201ENSMUST00000122538 73 ntBASIC-0,49□□□□□ -2,49
ShhQ62226 Gm22016-201ENSMUST00000158793 114 ntBASIC-0,49□□□□□ -2,49
ShhQ62226 Mir145b-201ENSMUST00000184434 75 ntBASIC-0,49□□□□□ -2,49
ShhQ62226 Gm44589-201ENSMUST00000207025 115 ntBASIC-0,49□□□□□ -2,49
ShhQ62226 mt-Tl2-201ENSMUST00000082417 71 ntBASIC-0,49□□□□□ -2,49
ShhQ62226 Gm23730-201ENSMUST00000083236 107 ntBASIC-0,49□□□□□ -2,49
ShhQ62226 Gm24108-201ENSMUST00000175495 77 ntBASIC-0,5□□□□□ -2,49
ShhQ62226 Snord57-201ENSMUST00000083338 72 ntBASIC-0,5□□□□□ -2,49
ShhQ62226 Gm22717-201ENSMUST00000122703 171 ntBASIC-0,51□□□□□ -2,49
ShhQ62226 Gm23199-201ENSMUST00000158812 107 ntBASIC-0,51□□□□□ -2,49
ShhQ62226 Mir136-201ENSMUST00000199494 62 ntBASIC-0,51□□□□□ -2,49
ShhQ62226 Gm26124-201ENSMUST00000083359 108 ntBASIC-0,51□□□□□ -2,49
ShhQ62226 Gm26257-201ENSMUST00000122500 107 ntBASIC-0,52□□□□□ -2,49
ShhQ62226 Gm25183-201ENSMUST00000157752 106 ntBASIC-0,52□□□□□ -2,49
ShhQ62226 Gm26262-201ENSMUST00000158024 127 ntBASIC-0,52□□□□□ -2,49
ShhQ62226 Gm10663-201ENSMUST00000098716 66 ntAPPRIS P1 TSL 5 BASIC-0,52□□□□□ -2,49
ShhQ62226 Mir297b-201ENSMUST00000102268 109 ntBASIC-0,53□□□□□ -2,49
ShhQ62226 Gm25225-201ENSMUST00000158197 102 ntBASIC-0,53□□□□□ -2,49
ShhQ62226 Gm24051-201ENSMUST00000158622 75 ntBASIC-0,53□□□□□ -2,49
ShhQ62226 Snord123-201ENSMUST00000158692 71 ntBASIC-0,53□□□□□ -2,49
ShhQ62226 Mir1839-201ENSMUST00000175366 127 ntBASIC-0,53□□□□□ -2,49
ShhQ62226 Mir103-1-201ENSMUST00000083619 86 ntBASIC-0,53□□□□□ -2,49
ShhQ62226 Gm24003-201ENSMUST00000158455 100 ntBASIC-0,54□□□□□ -2,5
ShhQ62226 Mir7057-201ENSMUST00000184685 58 ntBASIC-0,54□□□□□ -2,5
ShhQ62226 Mir181b-1-201ENSMUST00000083524 80 ntBASIC-0,54□□□□□ -2,5
ShhQ62226 Mir29b-1-201ENSMUST00000083670 71 ntBASIC-0,54□□□□□ -2,5
ShhQ62226 Gm25552-201ENSMUST00000158081 91 ntBASIC-0,55□□□□□ -2,5
ShhQ62226 Gm22746-201ENSMUST00000082494 107 ntBASIC-0,55□□□□□ -2,5
ShhQ62226 Gm25429-201ENSMUST00000157607 132 ntBASIC-0,56□□□□□ -2,5
ShhQ62226 Mir669m-1-201ENSMUST00000158945 98 ntBASIC-0,56□□□□□ -2,5
ShhQ62226 mt-Ts1-201ENSMUST00000082403 69 ntBASIC-0,56□□□□□ -2,5
ShhQ62226 Gm22938-201ENSMUST00000103956 120 ntBASIC-0,57□□□□□ -2,5
ShhQ62226 Gm26233-201ENSMUST00000175530 70 ntBASIC-0,57□□□□□ -2,5
ShhQ62226 Gm25648-201ENSMUST00000177844 79 ntBASIC-0,57□□□□□ -2,5
ShhQ62226 Gm29344-201ENSMUST00000068143 210 ntBASIC-0,57□□□□□ -2,5
ShhQ62226 Mir34c-201ENSMUST00000083653 77 ntBASIC-0,57□□□□□ -2,5
ShhQ62226 Gm27450-201ENSMUST00000104632 90 ntBASIC-0,58□□□□□ -2,5
ShhQ62226 Gm25847-201ENSMUST00000116793 96 ntBASIC-0,58□□□□□ -2,5
ShhQ62226 Gm23649-201ENSMUST00000179007 107 ntBASIC-0,58□□□□□ -2,5
ShhQ62226 Gm43943-201ENSMUST00000204201 113 ntBASIC-0,58□□□□□ -2,5
ShhQ62226 Gm25779-201ENSMUST00000116710 95 ntBASIC-0,59□□□□□ -2,5
ShhQ62226 Gm25995-201ENSMUST00000175396 142 ntBASIC-0,59□□□□□ -2,5
ShhQ62226 Mir3101-201ENSMUST00000175607 88 ntBASIC-0,59□□□□□ -2,5
ShhQ62226 Gm26375-201ENSMUST00000101829 106 ntBASIC-0,6□□□□□ -2,51
ShhQ62226 Gm22013-201ENSMUST00000158788 103 ntBASIC-0,6□□□□□ -2,51
ShhQ62226 Mir7043-201ENSMUST00000184219 70 ntBASIC-0,6□□□□□ -2,51
ShhQ62226 AC157278.1-201ENSMUST00000221621 148 ntBASIC-0,6□□□□□ -2,51
ShhQ62226 Gm24259-201ENSMUST00000083740 107 ntBASIC-0,6□□□□□ -2,51
ShhQ62226 Gm22067-201ENSMUST00000122790 107 ntBASIC-0,61□□□□□ -2,51
ShhQ62226 Gm22039-201ENSMUST00000157278 132 ntBASIC-0,61□□□□□ -2,51
ShhQ62226 Gm22965-201ENSMUST00000157958 101 ntBASIC-0,61□□□□□ -2,51
ShhQ62226 Gm24927-201ENSMUST00000083397 107 ntBASIC-0,61□□□□□ -2,51
ShhQ62226 Gm22602-201ENSMUST00000157596 95 ntBASIC-0,62□□□□□ -2,51
ShhQ62226 AC238676.2-201ENSMUST00000220910 94 ntBASIC-0,62□□□□□ -2,51
ShhQ62226 Mir669a-3-201ENSMUST00000102074 109 ntBASIC-0,63□□□□□ -2,51
ShhQ62226 Gm25222-201ENSMUST00000158199 126 ntBASIC-0,63□□□□□ -2,51
ShhQ62226 Gm26139-201ENSMUST00000180098 107 ntBASIC-0,63□□□□□ -2,51
ShhQ62226 Gm24797-201ENSMUST00000178103 107 ntBASIC-0,64□□□□□ -2,51
ShhQ62226 Gm24197-201ENSMUST00000175085 109 ntBASIC-0,65□□□□□ -2,51
ShhQ62226 Gm26043-201ENSMUST00000116912 91 ntBASIC-0,66□□□□□ -2,52
ShhQ62226 Gm25354-201ENSMUST00000179110 105 ntBASIC-0,66□□□□□ -2,52
ShhQ62226 Mir7055-201ENSMUST00000197423 59 ntBASIC-0,66□□□□□ -2,52
ShhQ62226 Mirlet7b-201ENSMUST00000083630 85 ntBASIC-0,66□□□□□ -2,52
ShhQ62226 Gm23812-201ENSMUST00000175156 84 ntBASIC-0,67□□□□□ -2,52
ShhQ62226 Gm23374-201ENSMUST00000175408 84 ntBASIC-0,67□□□□□ -2,52
ShhQ62226 Gm37646-201ENSMUST00000191756 111 ntBASIC-0,67□□□□□ -2,52
ShhQ62226 Gm44347-201ENSMUST00000199602 108 ntBASIC-0,67□□□□□ -2,52
ShhQ62226 Mir28c-201ENSMUST00000200096 75 ntBASIC-0,67□□□□□ -2,52
ShhQ62226 Gm23974-201ENSMUST00000083321 131 ntBASIC-0,67□□□□□ -2,52
ShhQ62226 Gm22071-201ENSMUST00000116857 83 ntBASIC-0,69□□□□□ -2,52
ShhQ62226 Gm24996-201ENSMUST00000158390 99 ntBASIC-0,69□□□□□ -2,52
ShhQ62226 Mir6964-201ENSMUST00000200252 59 ntBASIC-0,69□□□□□ -2,52
ShhQ62226 Gm25045-201ENSMUST00000122670 99 ntBASIC-0,7□□□□□ -2,52
ShhQ62226 Gm24775-201ENSMUST00000157377 99 ntBASIC-0,7□□□□□ -2,52
ShhQ62226 Mir543-201ENSMUST00000102286 76 ntBASIC-0,71□□□□□ -2,52
ShhQ62226 Gm23237-201ENSMUST00000104639 92 ntBASIC-0,71□□□□□ -2,52
ShhQ62226 Gm25903-201ENSMUST00000158492 103 ntBASIC-0,71□□□□□ -2,52
ShhQ62226 Gm25626-201ENSMUST00000177631 107 ntBASIC-0,71□□□□□ -2,52
ShhQ62226 Mir539-201ENSMUST00000102109 74 ntBASIC-0,72□□□□□ -2,52
ShhQ62226 Gm24673-201ENSMUST00000116948 124 ntBASIC-0,72□□□□□ -2,52
ShhQ62226 Gm23108-201ENSMUST00000178295 124 ntBASIC-0,72□□□□□ -2,52
ShhQ62226 AC154832.1-201ENSMUST00000228928 141 ntBASIC-0,72□□□□□ -2,52
ShhQ62226 Gm23961-201ENSMUST00000104685 97 ntBASIC-0,73□□□□□ -2,53
ShhQ62226 Gm25023-201ENSMUST00000082977 107 ntBASIC-0,73□□□□□ -2,53
ShhQ62226 Gm24646-201ENSMUST00000157109 99 ntBASIC-0,74□□□□□ -2,53
ShhQ62226 Mir6339-201ENSMUST00000185120 117 ntBASIC-0,74□□□□□ -2,53
ShhQ62226 Gm23613-201ENSMUST00000082596 87 ntBASIC-0,74□□□□□ -2,53
ShhQ62226 Gm22078-201ENSMUST00000157593 103 ntBASIC-0,75□□□□□ -2,53
ShhQ62226 Gm23992-201ENSMUST00000174981 67 ntBASIC-0,75□□□□□ -2,53
ShhQ62226 Gm27944-201ENSMUST00000185155 103 ntBASIC-0,75□□□□□ -2,53
ShhQ62226 Gm25493-201ENSMUST00000157375 103 ntBASIC-0,76□□□□□ -2,53
ShhQ62226 Mir1969-201ENSMUST00000157623 94 ntBASIC-0,76□□□□□ -2,53
ShhQ62226 Gm23811-201ENSMUST00000175155 84 ntBASIC-0,76□□□□□ -2,53
ShhQ62226 Mir367-201ENSMUST00000083479 75 ntBASIC-0,77□□□□□ -2,53
ShhQ62226 Mirlet7a-2-201ENSMUST00000175029 96 ntBASIC-0,78□□□□□ -2,53
ShhQ62226 Mir466q-201ENSMUST00000175249 76 ntBASIC-0,78□□□□□ -2,53
ShhQ62226 Gm17522-202ENSMUST00000186631 174 ntTSL 1 (best) BASIC-0,78□□□□□ -2,53
ShhQ62226 Gm17412-202ENSMUST00000189566 174 ntTSL 1 (best) BASIC-0,78□□□□□ -2,53
ShhQ62226 AC122210.2-201ENSMUST00000220216 115 ntBASIC-0,79□□□□□ -2,54
ShhQ62226 Gm24651-201ENSMUST00000157107 107 ntBASIC-0,8□□□□□ -2,54
Retrieved 100 of 76,532 protein–RNA pairs in 110,8 ms