Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm23787-201ENSMUST00000122538 73 ntBASIC-0.49□□□□□ -2.49
ShhQ62226 Gm22016-201ENSMUST00000158793 114 ntBASIC-0.49□□□□□ -2.49
ShhQ62226 Mir145b-201ENSMUST00000184434 75 ntBASIC-0.49□□□□□ -2.49
ShhQ62226 Gm44589-201ENSMUST00000207025 115 ntBASIC-0.49□□□□□ -2.49
ShhQ62226 mt-Tl2-201ENSMUST00000082417 71 ntBASIC-0.49□□□□□ -2.49
ShhQ62226 Gm23730-201ENSMUST00000083236 107 ntBASIC-0.49□□□□□ -2.49
ShhQ62226 Gm24108-201ENSMUST00000175495 77 ntBASIC-0.5□□□□□ -2.49
ShhQ62226 Snord57-201ENSMUST00000083338 72 ntBASIC-0.5□□□□□ -2.49
ShhQ62226 Gm22717-201ENSMUST00000122703 171 ntBASIC-0.51□□□□□ -2.49
ShhQ62226 Gm23199-201ENSMUST00000158812 107 ntBASIC-0.51□□□□□ -2.49
ShhQ62226 Mir136-201ENSMUST00000199494 62 ntBASIC-0.51□□□□□ -2.49
ShhQ62226 Gm26124-201ENSMUST00000083359 108 ntBASIC-0.51□□□□□ -2.49
ShhQ62226 Gm26257-201ENSMUST00000122500 107 ntBASIC-0.52□□□□□ -2.49
ShhQ62226 Gm25183-201ENSMUST00000157752 106 ntBASIC-0.52□□□□□ -2.49
ShhQ62226 Gm26262-201ENSMUST00000158024 127 ntBASIC-0.52□□□□□ -2.49
ShhQ62226 Gm10663-201ENSMUST00000098716 66 ntAPPRIS P1 TSL 5 BASIC-0.52□□□□□ -2.49
ShhQ62226 Mir297b-201ENSMUST00000102268 109 ntBASIC-0.53□□□□□ -2.49
ShhQ62226 Gm25225-201ENSMUST00000158197 102 ntBASIC-0.53□□□□□ -2.49
ShhQ62226 Gm24051-201ENSMUST00000158622 75 ntBASIC-0.53□□□□□ -2.49
ShhQ62226 Snord123-201ENSMUST00000158692 71 ntBASIC-0.53□□□□□ -2.49
ShhQ62226 Mir1839-201ENSMUST00000175366 127 ntBASIC-0.53□□□□□ -2.49
ShhQ62226 Mir103-1-201ENSMUST00000083619 86 ntBASIC-0.53□□□□□ -2.49
ShhQ62226 Gm24003-201ENSMUST00000158455 100 ntBASIC-0.54□□□□□ -2.5
ShhQ62226 Mir7057-201ENSMUST00000184685 58 ntBASIC-0.54□□□□□ -2.5
ShhQ62226 Mir181b-1-201ENSMUST00000083524 80 ntBASIC-0.54□□□□□ -2.5
ShhQ62226 Mir29b-1-201ENSMUST00000083670 71 ntBASIC-0.54□□□□□ -2.5
ShhQ62226 Gm25552-201ENSMUST00000158081 91 ntBASIC-0.55□□□□□ -2.5
ShhQ62226 Gm22746-201ENSMUST00000082494 107 ntBASIC-0.55□□□□□ -2.5
ShhQ62226 Gm25429-201ENSMUST00000157607 132 ntBASIC-0.56□□□□□ -2.5
ShhQ62226 Mir669m-1-201ENSMUST00000158945 98 ntBASIC-0.56□□□□□ -2.5
ShhQ62226 mt-Ts1-201ENSMUST00000082403 69 ntBASIC-0.56□□□□□ -2.5
ShhQ62226 Gm22938-201ENSMUST00000103956 120 ntBASIC-0.57□□□□□ -2.5
ShhQ62226 Gm26233-201ENSMUST00000175530 70 ntBASIC-0.57□□□□□ -2.5
ShhQ62226 Gm25648-201ENSMUST00000177844 79 ntBASIC-0.57□□□□□ -2.5
ShhQ62226 Gm29344-201ENSMUST00000068143 210 ntBASIC-0.57□□□□□ -2.5
ShhQ62226 Mir34c-201ENSMUST00000083653 77 ntBASIC-0.57□□□□□ -2.5
ShhQ62226 Gm27450-201ENSMUST00000104632 90 ntBASIC-0.58□□□□□ -2.5
ShhQ62226 Gm25847-201ENSMUST00000116793 96 ntBASIC-0.58□□□□□ -2.5
ShhQ62226 Gm23649-201ENSMUST00000179007 107 ntBASIC-0.58□□□□□ -2.5
ShhQ62226 Gm43943-201ENSMUST00000204201 113 ntBASIC-0.58□□□□□ -2.5
ShhQ62226 Gm25779-201ENSMUST00000116710 95 ntBASIC-0.59□□□□□ -2.5
ShhQ62226 Gm25995-201ENSMUST00000175396 142 ntBASIC-0.59□□□□□ -2.5
ShhQ62226 Mir3101-201ENSMUST00000175607 88 ntBASIC-0.59□□□□□ -2.5
ShhQ62226 Gm26375-201ENSMUST00000101829 106 ntBASIC-0.6□□□□□ -2.51
ShhQ62226 Gm22013-201ENSMUST00000158788 103 ntBASIC-0.6□□□□□ -2.51
ShhQ62226 Mir7043-201ENSMUST00000184219 70 ntBASIC-0.6□□□□□ -2.51
ShhQ62226 AC157278.1-201ENSMUST00000221621 148 ntBASIC-0.6□□□□□ -2.51
ShhQ62226 Gm24259-201ENSMUST00000083740 107 ntBASIC-0.6□□□□□ -2.51
ShhQ62226 Gm22067-201ENSMUST00000122790 107 ntBASIC-0.61□□□□□ -2.51
ShhQ62226 Gm22039-201ENSMUST00000157278 132 ntBASIC-0.61□□□□□ -2.51
ShhQ62226 Gm22965-201ENSMUST00000157958 101 ntBASIC-0.61□□□□□ -2.51
ShhQ62226 Gm24927-201ENSMUST00000083397 107 ntBASIC-0.61□□□□□ -2.51
ShhQ62226 Gm22602-201ENSMUST00000157596 95 ntBASIC-0.62□□□□□ -2.51
ShhQ62226 AC238676.2-201ENSMUST00000220910 94 ntBASIC-0.62□□□□□ -2.51
ShhQ62226 Mir669a-3-201ENSMUST00000102074 109 ntBASIC-0.63□□□□□ -2.51
ShhQ62226 Gm25222-201ENSMUST00000158199 126 ntBASIC-0.63□□□□□ -2.51
ShhQ62226 Gm26139-201ENSMUST00000180098 107 ntBASIC-0.63□□□□□ -2.51
ShhQ62226 Gm24797-201ENSMUST00000178103 107 ntBASIC-0.64□□□□□ -2.51
ShhQ62226 Gm24197-201ENSMUST00000175085 109 ntBASIC-0.65□□□□□ -2.51
ShhQ62226 Gm26043-201ENSMUST00000116912 91 ntBASIC-0.66□□□□□ -2.52
ShhQ62226 Gm25354-201ENSMUST00000179110 105 ntBASIC-0.66□□□□□ -2.52
ShhQ62226 Mir7055-201ENSMUST00000197423 59 ntBASIC-0.66□□□□□ -2.52
ShhQ62226 Mirlet7b-201ENSMUST00000083630 85 ntBASIC-0.66□□□□□ -2.52
ShhQ62226 Gm23812-201ENSMUST00000175156 84 ntBASIC-0.67□□□□□ -2.52
ShhQ62226 Gm23374-201ENSMUST00000175408 84 ntBASIC-0.67□□□□□ -2.52
ShhQ62226 Gm37646-201ENSMUST00000191756 111 ntBASIC-0.67□□□□□ -2.52
ShhQ62226 Gm44347-201ENSMUST00000199602 108 ntBASIC-0.67□□□□□ -2.52
ShhQ62226 Mir28c-201ENSMUST00000200096 75 ntBASIC-0.67□□□□□ -2.52
ShhQ62226 Gm23974-201ENSMUST00000083321 131 ntBASIC-0.67□□□□□ -2.52
ShhQ62226 Gm22071-201ENSMUST00000116857 83 ntBASIC-0.69□□□□□ -2.52
ShhQ62226 Gm24996-201ENSMUST00000158390 99 ntBASIC-0.69□□□□□ -2.52
ShhQ62226 Mir6964-201ENSMUST00000200252 59 ntBASIC-0.69□□□□□ -2.52
ShhQ62226 Gm25045-201ENSMUST00000122670 99 ntBASIC-0.7□□□□□ -2.52
ShhQ62226 Gm24775-201ENSMUST00000157377 99 ntBASIC-0.7□□□□□ -2.52
ShhQ62226 Mir543-201ENSMUST00000102286 76 ntBASIC-0.71□□□□□ -2.52
ShhQ62226 Gm23237-201ENSMUST00000104639 92 ntBASIC-0.71□□□□□ -2.52
ShhQ62226 Gm25903-201ENSMUST00000158492 103 ntBASIC-0.71□□□□□ -2.52
ShhQ62226 Gm25626-201ENSMUST00000177631 107 ntBASIC-0.71□□□□□ -2.52
ShhQ62226 Mir539-201ENSMUST00000102109 74 ntBASIC-0.72□□□□□ -2.52
ShhQ62226 Gm24673-201ENSMUST00000116948 124 ntBASIC-0.72□□□□□ -2.52
ShhQ62226 Gm23108-201ENSMUST00000178295 124 ntBASIC-0.72□□□□□ -2.52
ShhQ62226 AC154832.1-201ENSMUST00000228928 141 ntBASIC-0.72□□□□□ -2.52
ShhQ62226 Gm23961-201ENSMUST00000104685 97 ntBASIC-0.73□□□□□ -2.53
ShhQ62226 Gm25023-201ENSMUST00000082977 107 ntBASIC-0.73□□□□□ -2.53
ShhQ62226 Gm24646-201ENSMUST00000157109 99 ntBASIC-0.74□□□□□ -2.53
ShhQ62226 Mir6339-201ENSMUST00000185120 117 ntBASIC-0.74□□□□□ -2.53
ShhQ62226 Gm23613-201ENSMUST00000082596 87 ntBASIC-0.74□□□□□ -2.53
ShhQ62226 Gm22078-201ENSMUST00000157593 103 ntBASIC-0.75□□□□□ -2.53
ShhQ62226 Gm23992-201ENSMUST00000174981 67 ntBASIC-0.75□□□□□ -2.53
ShhQ62226 Gm27944-201ENSMUST00000185155 103 ntBASIC-0.75□□□□□ -2.53
ShhQ62226 Gm25493-201ENSMUST00000157375 103 ntBASIC-0.76□□□□□ -2.53
ShhQ62226 Mir1969-201ENSMUST00000157623 94 ntBASIC-0.76□□□□□ -2.53
ShhQ62226 Gm23811-201ENSMUST00000175155 84 ntBASIC-0.76□□□□□ -2.53
ShhQ62226 Mir367-201ENSMUST00000083479 75 ntBASIC-0.77□□□□□ -2.53
ShhQ62226 Mirlet7a-2-201ENSMUST00000175029 96 ntBASIC-0.78□□□□□ -2.53
ShhQ62226 Mir466q-201ENSMUST00000175249 76 ntBASIC-0.78□□□□□ -2.53
ShhQ62226 Gm17522-202ENSMUST00000186631 174 ntTSL 1 (best) BASIC-0.78□□□□□ -2.53
ShhQ62226 Gm17412-202ENSMUST00000189566 174 ntTSL 1 (best) BASIC-0.78□□□□□ -2.53
ShhQ62226 AC122210.2-201ENSMUST00000220216 115 ntBASIC-0.79□□□□□ -2.54
ShhQ62226 Gm24651-201ENSMUST00000157107 107 ntBASIC-0.8□□□□□ -2.54
Retrieved 100 of 76,532 protein–RNA pairs in 132 ms