Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24701-201ENSMUST00000101946 105 ntBASIC-0.28□□□□□ -2.45
ShhQ62226 Gm24336-201ENSMUST00000104203 146 ntBASIC-0.28□□□□□ -2.45
ShhQ62226 Gm23856-201ENSMUST00000158380 99 ntBASIC-0.28□□□□□ -2.45
ShhQ62226 Gm24971-201ENSMUST00000175581 110 ntBASIC-0.28□□□□□ -2.45
ShhQ62226 Gm24495-201ENSMUST00000178575 79 ntBASIC-0.28□□□□□ -2.45
ShhQ62226 Gm22253-201ENSMUST00000179870 79 ntBASIC-0.28□□□□□ -2.45
ShhQ62226 Gm24047-201ENSMUST00000102405 104 ntBASIC-0.29□□□□□ -2.46
ShhQ62226 Gm11111-201ENSMUST00000112956 99 ntAPPRIS P1 TSL 5 BASIC-0.29□□□□□ -2.46
ShhQ62226 Gm11116-201ENSMUST00000113257 54 ntAPPRIS P1 TSL 5 BASIC-0.29□□□□□ -2.46
ShhQ62226 Gm25382-201ENSMUST00000157811 97 ntBASIC-0.29□□□□□ -2.46
ShhQ62226 CT030170.1-201ENSMUST00000222183 148 ntBASIC-0.29□□□□□ -2.46
ShhQ62226 Gm23376-201ENSMUST00000082938 160 ntBASIC-0.29□□□□□ -2.46
ShhQ62226 Mir494-201ENSMUST00000093632 85 ntBASIC-0.29□□□□□ -2.46
ShhQ62226 Gm24400-201ENSMUST00000157865 107 ntBASIC-0.3□□□□□ -2.46
ShhQ62226 Mir344h-1-201ENSMUST00000174922 60 ntBASIC-0.3□□□□□ -2.46
ShhQ62226 Mir344h-2-201ENSMUST00000175612 60 ntBASIC-0.3□□□□□ -2.46
ShhQ62226 Gm27798-201ENSMUST00000184989 71 ntBASIC-0.3□□□□□ -2.46
ShhQ62226 Mir7231-201ENSMUST00000196252 61 ntBASIC-0.3□□□□□ -2.46
ShhQ62226 AC167019.1-201ENSMUST00000227913 106 ntBASIC-0.3□□□□□ -2.46
ShhQ62226 Gm24203-201ENSMUST00000082949 114 ntBASIC-0.3□□□□□ -2.46
ShhQ62226 Gm27610-201ENSMUST00000184026 74 ntBASIC-0.31□□□□□ -2.46
ShhQ62226 Gm42773-201ENSMUST00000196962 148 ntBASIC-0.31□□□□□ -2.46
ShhQ62226 AC161271.1-201ENSMUST00000226914 150 ntBASIC-0.31□□□□□ -2.46
ShhQ62226 Mir15b-201ENSMUST00000083646 64 ntBASIC-0.31□□□□□ -2.46
ShhQ62226 Gm25087-201ENSMUST00000101992 78 ntBASIC-0.32□□□□□ -2.46
ShhQ62226 Gm24331-201ENSMUST00000175099 67 ntBASIC-0.32□□□□□ -2.46
ShhQ62226 Gm23801-201ENSMUST00000175561 67 ntBASIC-0.32□□□□□ -2.46
ShhQ62226 Gm25158-201ENSMUST00000177681 121 ntBASIC-0.32□□□□□ -2.46
ShhQ62226 Gm24485-201ENSMUST00000178283 67 ntBASIC-0.32□□□□□ -2.46
ShhQ62226 Gm26229-201ENSMUST00000179699 121 ntBASIC-0.32□□□□□ -2.46
ShhQ62226 Gm22305-201ENSMUST00000082690 108 ntBASIC-0.32□□□□□ -2.46
ShhQ62226 Gm26467-201ENSMUST00000097257 78 ntBASIC-0.32□□□□□ -2.46
ShhQ62226 Mir18b-201ENSMUST00000103923 83 ntBASIC-0.33□□□□□ -2.46
ShhQ62226 Gm22335-201ENSMUST00000157724 99 ntBASIC-0.33□□□□□ -2.46
ShhQ62226 Gm25652-201ENSMUST00000083780 103 ntBASIC-0.33□□□□□ -2.46
ShhQ62226 Mir702-201ENSMUST00000102285 109 ntBASIC-0.34□□□□□ -2.46
ShhQ62226 Gm22197-201ENSMUST00000116866 58 ntBASIC-0.34□□□□□ -2.46
ShhQ62226 Gm23173-201ENSMUST00000157161 160 ntBASIC-0.34□□□□□ -2.46
ShhQ62226 Gm23590-201ENSMUST00000157661 104 ntBASIC-0.34□□□□□ -2.46
ShhQ62226 Gm23477-201ENSMUST00000158882 128 ntBASIC-0.34□□□□□ -2.46
ShhQ62226 Gm21961-201ENSMUST00000110100 114 ntAPPRIS P1 TSL 5 BASIC-0.35□□□□□ -2.47
ShhQ62226 Mir6957-201ENSMUST00000183708 64 ntBASIC-0.35□□□□□ -2.47
ShhQ62226 Gm22813-202ENSMUST00000200346 124 ntBASIC-0.35□□□□□ -2.47
ShhQ62226 Gm24091-201ENSMUST00000082550 83 ntBASIC-0.35□□□□□ -2.47
ShhQ62226 Gm24612-201ENSMUST00000083267 107 ntBASIC-0.35□□□□□ -2.47
ShhQ62226 Gm23711-201ENSMUST00000083856 83 ntBASIC-0.35□□□□□ -2.47
ShhQ62226 Mir297-1-201ENSMUST00000103800 76 ntBASIC-0.36□□□□□ -2.47
ShhQ62226 Gm27645-201ENSMUST00000183348 77 ntBASIC-0.36□□□□□ -2.47
ShhQ62226 Gm20305-201ENSMUST00000193226 177 ntBASIC-0.36□□□□□ -2.47
ShhQ62226 Gm23293-201ENSMUST00000082552 104 ntBASIC-0.36□□□□□ -2.47
ShhQ62226 Gm23909-201ENSMUST00000104598 131 ntBASIC-0.37□□□□□ -2.47
ShhQ62226 Mir466f-1-201ENSMUST00000104779 94 ntBASIC-0.37□□□□□ -2.47
ShhQ62226 Gm11084-201ENSMUST00000112062 69 ntAPPRIS P1 TSL 5 BASIC-0.37□□□□□ -2.47
ShhQ62226 Gm22234-201ENSMUST00000174906 65 ntBASIC-0.37□□□□□ -2.47
ShhQ62226 Svbp-204ENSMUST00000210595 150 ntTSL 5 BASIC-0.37□□□□□ -2.47
ShhQ62226 Mir145a-201ENSMUST00000083658 70 ntBASIC-0.37□□□□□ -2.47
ShhQ62226 Traj42-201ENSMUST00000103700 64 ntAPPRIS P1 BASIC-0.38□□□□□ -2.47
ShhQ62226 Gm23573-201ENSMUST00000104408 107 ntBASIC-0.38□□□□□ -2.47
ShhQ62226 Cyp2j7-ps1-201ENSMUST00000122430 173 ntBASIC-0.38□□□□□ -2.47
ShhQ62226 Gm23904-201ENSMUST00000157567 124 ntBASIC-0.38□□□□□ -2.47
ShhQ62226 Gm23072-201ENSMUST00000158243 123 ntBASIC-0.38□□□□□ -2.47
ShhQ62226 Gm25862-201ENSMUST00000158250 129 ntBASIC-0.38□□□□□ -2.47
ShhQ62226 Mir148a-201ENSMUST00000083571 99 ntBASIC-0.38□□□□□ -2.47
ShhQ62226 Gm26052-201ENSMUST00000104646 84 ntBASIC-0.39□□□□□ -2.47
ShhQ62226 Gm23785-201ENSMUST00000116741 96 ntBASIC-0.39□□□□□ -2.47
ShhQ62226 Mir677-202ENSMUST00000197076 78 ntBASIC-0.39□□□□□ -2.47
ShhQ62226 Gm25137-201ENSMUST00000083251 110 ntBASIC-0.39□□□□□ -2.47
ShhQ62226 Gm24704-201ENSMUST00000093715 107 ntBASIC-0.39□□□□□ -2.47
ShhQ62226 Gm23831-201ENSMUST00000158895 85 ntBASIC-0.4□□□□□ -2.47
ShhQ62226 Gm23216-201ENSMUST00000179545 107 ntBASIC-0.4□□□□□ -2.47
ShhQ62226 Gm26131-201ENSMUST00000082725 110 ntBASIC-0.4□□□□□ -2.47
ShhQ62226 Gm24226-201ENSMUST00000158826 97 ntBASIC-0.41□□□□□ -2.48
ShhQ62226 Mir183-201ENSMUST00000083685 70 ntBASIC-0.41□□□□□ -2.48
ShhQ62226 Gm25431-201ENSMUST00000101978 107 ntBASIC-0.42□□□□□ -2.48
ShhQ62226 Gm25388-201ENSMUST00000157339 151 ntBASIC-0.42□□□□□ -2.48
ShhQ62226 Gm25712-201ENSMUST00000158634 93 ntBASIC-0.42□□□□□ -2.48
ShhQ62226 Gm22095-201ENSMUST00000158984 150 ntBASIC-0.42□□□□□ -2.48
ShhQ62226 Gm19248-201ENSMUST00000209404 110 ntBASIC-0.42□□□□□ -2.48
ShhQ62226 Gm26491-201ENSMUST00000179268 121 ntBASIC-0.43□□□□□ -2.48
ShhQ62226 Mir6961-201ENSMUST00000183874 67 ntBASIC-0.43□□□□□ -2.48
ShhQ62226 Gm44311-201ENSMUST00000196448 69 ntBASIC-0.43□□□□□ -2.48
ShhQ62226 Gm25326-201ENSMUST00000101903 107 ntBASIC-0.44□□□□□ -2.48
ShhQ62226 Gm23166-201ENSMUST00000157164 101 ntBASIC-0.45□□□□□ -2.48
ShhQ62226 Gm26485-201ENSMUST00000158019 64 ntBASIC-0.45□□□□□ -2.48
ShhQ62226 Mir5124b-201ENSMUST00000184251 85 ntBASIC-0.45□□□□□ -2.48
ShhQ62226 Gm22357-201ENSMUST00000082882 83 ntBASIC-0.45□□□□□ -2.48
ShhQ62226 Mir302c-201ENSMUST00000083548 68 ntBASIC-0.45□□□□□ -2.48
ShhQ62226 Gm24378-201ENSMUST00000122699 106 ntBASIC-0.46□□□□□ -2.48
ShhQ62226 Snord16a-201ENSMUST00000083895 99 ntBASIC-0.46□□□□□ -2.48
ShhQ62226 Mir466l-201ENSMUST00000104866 121 ntBASIC-0.47□□□□□ -2.48
ShhQ62226 Gm23630-201ENSMUST00000175292 104 ntBASIC-0.47□□□□□ -2.48
ShhQ62226 Gm27884-201ENSMUST00000183865 76 ntBASIC-0.47□□□□□ -2.48
ShhQ62226 Mir1948-201ENSMUST00000157325 85 ntBASIC-0.48□□□□□ -2.49
ShhQ62226 Gm24725-201ENSMUST00000158229 125 ntBASIC-0.48□□□□□ -2.49
ShhQ62226 Gm24723-201ENSMUST00000158233 132 ntBASIC-0.48□□□□□ -2.49
ShhQ62226 Gm23308-201ENSMUST00000179475 107 ntBASIC-0.48□□□□□ -2.49
ShhQ62226 9230110F11Rik-202ENSMUST00000212907 191 ntTSL 5 BASIC-0.48□□□□□ -2.49
ShhQ62226 n-R5s8-201ENSMUST00000104121 118 ntBASIC-0.49□□□□□ -2.49
ShhQ62226 Gm22033-201ENSMUST00000116947 90 ntBASIC-0.49□□□□□ -2.49
ShhQ62226 Gm11966-201ENSMUST00000119907 87 ntBASIC-0.49□□□□□ -2.49
Retrieved 100 of 76,532 protein–RNA pairs in 136.2 ms