Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm26210-201ENSMUST00000158680 91 ntBASIC-0.04□□□□□ -2.42
ShhQ62226 Gm25596-201ENSMUST00000178368 107 ntBASIC-0.04□□□□□ -2.42
ShhQ62226 Gm43206-201ENSMUST00000197990 114 ntBASIC-0.04□□□□□ -2.42
ShhQ62226 AC158537.2-201ENSMUST00000223575 150 ntBASIC-0.04□□□□□ -2.42
ShhQ62226 Gm22165-201ENSMUST00000158414 103 ntBASIC-0.05□□□□□ -2.42
ShhQ62226 Gm24201-201ENSMUST00000082946 125 ntBASIC-0.05□□□□□ -2.42
ShhQ62226 Gm25681-201ENSMUST00000083938 106 ntBASIC-0.05□□□□□ -2.42
ShhQ62226 Gm27735-201ENSMUST00000185085 76 ntBASIC-0.06□□□□□ -2.42
ShhQ62226 Gm22298-201ENSMUST00000082662 133 ntBASIC-0.06□□□□□ -2.42
ShhQ62226 Gm25417-201ENSMUST00000104212 131 ntBASIC-0.07□□□□□ -2.42
ShhQ62226 Gm25510-201ENSMUST00000116986 123 ntBASIC-0.07□□□□□ -2.42
ShhQ62226 Mir214-201ENSMUST00000083582 110 ntBASIC-0.07□□□□□ -2.42
ShhQ62226 Mir23a-201ENSMUST00000083677 75 ntBASIC-0.07□□□□□ -2.42
ShhQ62226 Mir487b-201ENSMUST00000102265 82 ntBASIC-0.08□□□□□ -2.42
ShhQ62226 Gm24070-201ENSMUST00000104519 130 ntBASIC-0.08□□□□□ -2.42
ShhQ62226 Gm26051-201ENSMUST00000104642 93 ntBASIC-0.08□□□□□ -2.42
ShhQ62226 Gm23306-201ENSMUST00000179058 105 ntBASIC-0.08□□□□□ -2.42
ShhQ62226 Gm27987-201ENSMUST00000184023 93 ntBASIC-0.08□□□□□ -2.42
ShhQ62226 Gm25802-201ENSMUST00000082639 77 ntBASIC-0.08□□□□□ -2.42
ShhQ62226 Gm25010-201ENSMUST00000158403 65 ntBASIC-0.09□□□□□ -2.42
ShhQ62226 Mir3470a-201ENSMUST00000175223 77 ntBASIC-0.09□□□□□ -2.42
ShhQ62226 Gm22813-201ENSMUST00000199948 123 ntBASIC-0.09□□□□□ -2.42
ShhQ62226 Gm45374-201ENSMUST00000211388 136 ntBASIC-0.09□□□□□ -2.42
ShhQ62226 Traj38-201ENSMUST00000103704 62 ntAPPRIS P1 BASIC-0.1□□□□□ -2.43
ShhQ62226 Gm22539-201ENSMUST00000158167 117 ntBASIC-0.1□□□□□ -2.43
ShhQ62226 Gm44375-201ENSMUST00000196657 150 ntBASIC-0.1□□□□□ -2.43
ShhQ62226 Gm23690-201ENSMUST00000083036 94 ntBASIC-0.1□□□□□ -2.43
ShhQ62226 Gm24455-201ENSMUST00000083348 131 ntBASIC-0.1□□□□□ -2.43
ShhQ62226 Gm24988-201ENSMUST00000104460 121 ntBASIC-0.11□□□□□ -2.43
ShhQ62226 Gm24593-201ENSMUST00000122507 106 ntBASIC-0.11□□□□□ -2.43
ShhQ62226 Gm23817-201ENSMUST00000158449 104 ntBASIC-0.11□□□□□ -2.43
ShhQ62226 Gm24918-201ENSMUST00000083022 130 ntBASIC-0.11□□□□□ -2.43
ShhQ62226 Gm24587-201ENSMUST00000116697 89 ntBASIC-0.12□□□□□ -2.43
ShhQ62226 Mir1950-201ENSMUST00000158526 74 ntBASIC-0.12□□□□□ -2.43
ShhQ62226 Gm24674-201ENSMUST00000179194 104 ntBASIC-0.12□□□□□ -2.43
ShhQ62226 AL845349.1-201ENSMUST00000213794 78 ntBASIC-0.12□□□□□ -2.43
ShhQ62226 Gm6607-201ENSMUST00000215035 328 ntBASIC-0.12□□□□□ -2.43
ShhQ62226 Gm23056-201ENSMUST00000082803 111 ntBASIC-0.12□□□□□ -2.43
ShhQ62226 Gm26395-201ENSMUST00000104094 132 ntBASIC-0.13□□□□□ -2.43
ShhQ62226 Gm23483-201ENSMUST00000104179 108 ntBASIC-0.13□□□□□ -2.43
ShhQ62226 Gm23494-201ENSMUST00000116830 126 ntBASIC-0.13□□□□□ -2.43
ShhQ62226 Gm25641-201ENSMUST00000175135 108 ntBASIC-0.13□□□□□ -2.43
ShhQ62226 Gm23918-201ENSMUST00000175253 106 ntBASIC-0.13□□□□□ -2.43
ShhQ62226 Gm27554-201ENSMUST00000185074 98 ntBASIC-0.13□□□□□ -2.43
ShhQ62226 Snora16a-202ENSMUST00000196061 137 ntBASIC-0.13□□□□□ -2.43
ShhQ62226 Snora62-201ENSMUST00000082991 149 ntBASIC-0.13□□□□□ -2.43
ShhQ62226 Gm37832-201ENSMUST00000118935 189 ntBASIC-0.14□□□□□ -2.43
ShhQ62226 Gm25149-201ENSMUST00000157119 82 ntBASIC-0.14□□□□□ -2.43
ShhQ62226 Gm39149-201ENSMUST00000210258 186 ntTSL 5 BASIC-0.14□□□□□ -2.43
ShhQ62226 Gm23570-201ENSMUST00000083029 104 ntBASIC-0.14□□□□□ -2.43
ShhQ62226 Mir717-201ENSMUST00000102259 109 ntBASIC-0.15□□□□□ -2.43
ShhQ62226 Gm22607-201ENSMUST00000158291 105 ntBASIC-0.15□□□□□ -2.43
ShhQ62226 Gm24508-201ENSMUST00000180104 107 ntBASIC-0.15□□□□□ -2.43
ShhQ62226 Gm45125-201ENSMUST00000206908 151 ntBASIC-0.15□□□□□ -2.43
ShhQ62226 Snord42b-201ENSMUST00000083742 69 ntBASIC-0.15□□□□□ -2.43
ShhQ62226 Gm24377-201ENSMUST00000104398 131 ntBASIC-0.16□□□□□ -2.44
ShhQ62226 Gm11333-201ENSMUST00000119479 148 ntBASIC-0.16□□□□□ -2.44
ShhQ62226 Gm22324-201ENSMUST00000158903 114 ntBASIC-0.16□□□□□ -2.44
ShhQ62226 Gm27263-201ENSMUST00000184760 76 ntBASIC-0.16□□□□□ -2.44
ShhQ62226 AC122335.1-201ENSMUST00000217587 175 ntBASIC-0.16□□□□□ -2.44
ShhQ62226 Gm24887-201ENSMUST00000104386 108 ntBASIC-0.17□□□□□ -2.44
ShhQ62226 Gm22679-201ENSMUST00000116975 100 ntBASIC-0.17□□□□□ -2.44
ShhQ62226 Gm22157-201ENSMUST00000158410 104 ntBASIC-0.17□□□□□ -2.44
ShhQ62226 Snord45b-201ENSMUST00000082797 71 ntBASIC-0.17□□□□□ -2.44
ShhQ62226 Mir574-201ENSMUST00000103854 78 ntBASIC-0.18□□□□□ -2.44
ShhQ62226 Snord91a-201ENSMUST00000104305 93 ntBASIC-0.18□□□□□ -2.44
ShhQ62226 Gm23017-201ENSMUST00000177583 72 ntBASIC-0.18□□□□□ -2.44
ShhQ62226 Gm27749-201ENSMUST00000183651 125 ntBASIC-0.18□□□□□ -2.44
ShhQ62226 Gm27784-201ENSMUST00000184926 113 ntBASIC-0.18□□□□□ -2.44
ShhQ62226 Mir142b-201ENSMUST00000083486 115 ntBASIC-0.18□□□□□ -2.44
ShhQ62226 Gm24372-201ENSMUST00000104400 110 ntBASIC-0.19□□□□□ -2.44
ShhQ62226 Mir7038-201ENSMUST00000184833 71 ntBASIC-0.19□□□□□ -2.44
ShhQ62226 Trgj1-201ENSMUST00000200495 60 ntAPPRIS P1 BASIC-0.19□□□□□ -2.44
ShhQ62226 Gm25032-201ENSMUST00000175411 84 ntBASIC-0.2□□□□□ -2.44
ShhQ62226 Gm21836-201ENSMUST00000178787 63 ntAPPRIS P1 BASIC-0.2□□□□□ -2.44
ShhQ62226 Gm23726-201ENSMUST00000178937 67 ntBASIC-0.2□□□□□ -2.44
ShhQ62226 Gm6293-201ENSMUST00000050339 195 ntBASIC-0.2□□□□□ -2.44
ShhQ62226 Mir1187-201ENSMUST00000116936 122 ntBASIC-0.21□□□□□ -2.44
ShhQ62226 Gm23955-201ENSMUST00000157214 100 ntBASIC-0.21□□□□□ -2.44
ShhQ62226 Gm27415-201ENSMUST00000183720 95 ntBASIC-0.21□□□□□ -2.44
ShhQ62226 Gm24296-201ENSMUST00000158297 106 ntBASIC-0.22□□□□□ -2.44
ShhQ62226 Gm25248-201ENSMUST00000175473 98 ntBASIC-0.22□□□□□ -2.44
ShhQ62226 Gm25338-201ENSMUST00000116849 120 ntBASIC-0.23□□□□□ -2.45
ShhQ62226 Gm24946-201ENSMUST00000158332 106 ntBASIC-0.23□□□□□ -2.45
ShhQ62226 Gm25472-201ENSMUST00000175454 78 ntBASIC-0.23□□□□□ -2.45
ShhQ62226 Mir7094-2-201ENSMUST00000184622 60 ntBASIC-0.23□□□□□ -2.45
ShhQ62226 Mir7094-1-201ENSMUST00000199671 60 ntBASIC-0.23□□□□□ -2.45
ShhQ62226 Gm22595-201ENSMUST00000104250 130 ntBASIC-0.24□□□□□ -2.45
ShhQ62226 Mir876-201ENSMUST00000104659 81 ntBASIC-0.24□□□□□ -2.45
ShhQ62226 Gm24823-201ENSMUST00000175092 91 ntBASIC-0.25□□□□□ -2.45
ShhQ62226 Mir378c-201ENSMUST00000184478 99 ntBASIC-0.25□□□□□ -2.45
ShhQ62226 Gm23240-201ENSMUST00000083009 121 ntBASIC-0.25□□□□□ -2.45
ShhQ62226 Gm24714-201ENSMUST00000102382 101 ntBASIC-0.26□□□□□ -2.45
ShhQ62226 Gm23314-201ENSMUST00000157218 107 ntBASIC-0.26□□□□□ -2.45
ShhQ62226 Traj34-201ENSMUST00000103707 58 ntAPPRIS P1 BASIC-0.27□□□□□ -2.45
ShhQ62226 Gm23607-201ENSMUST00000104550 126 ntBASIC-0.27□□□□□ -2.45
ShhQ62226 Gm25249-201ENSMUST00000175471 78 ntBASIC-0.27□□□□□ -2.45
ShhQ62226 Mir3064-201ENSMUST00000175532 67 ntBASIC-0.27□□□□□ -2.45
ShhQ62226 Snora16a-201ENSMUST00000083163 136 ntBASIC-0.27□□□□□ -2.45
ShhQ62226 Mir96-201ENSMUST00000083652 106 ntBASIC-0.27□□□□□ -2.45
Retrieved 100 of 76,532 protein–RNA pairs in 138.7 ms