Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Snord67-201ENSMUST00000104033 111 ntBASIC0.17□□□□□ -2.38
ShhQ62226 Gm23652-201ENSMUST00000116752 107 ntBASIC0.17□□□□□ -2.38
ShhQ62226 Gm25952-201ENSMUST00000175329 74 ntBASIC0.17□□□□□ -2.38
ShhQ62226 Gm45617-201ENSMUST00000211132 209 ntBASIC0.17□□□□□ -2.38
ShhQ62226 Gm14947-201ENSMUST00000133704 303 ntBASIC0.16□□□□□ -2.38
ShhQ62226 Gm44328-201ENSMUST00000199331 75 ntBASIC0.16□□□□□ -2.38
ShhQ62226 mt-Tw-201ENSMUST00000082397 67 ntBASIC0.16□□□□□ -2.38
ShhQ62226 Gm22454-201ENSMUST00000082583 107 ntBASIC0.16□□□□□ -2.38
ShhQ62226 Gm25791-201ENSMUST00000083292 137 ntBASIC0.16□□□□□ -2.38
ShhQ62226 Traj53-201ENSMUST00000103690 66 ntAPPRIS P1 BASIC0.15□□□□□ -2.39
ShhQ62226 Gm26359-201ENSMUST00000158873 101 ntBASIC0.15□□□□□ -2.39
ShhQ62226 Gm44932-201ENSMUST00000206799 121 ntBASIC0.15□□□□□ -2.39
ShhQ62226 Gm22950-201ENSMUST00000082776 107 ntBASIC0.15□□□□□ -2.39
ShhQ62226 Gm25772-201ENSMUST00000158574 56 ntBASIC0.14□□□□□ -2.39
ShhQ62226 Gm45688-201ENSMUST00000210002 101 ntBASIC0.14□□□□□ -2.39
ShhQ62226 mt-Tl1-201ENSMUST00000082391 75 ntBASIC0.14□□□□□ -2.39
ShhQ62226 Gm25798-201ENSMUST00000082641 107 ntBASIC0.14□□□□□ -2.39
ShhQ62226 Gm25022-201ENSMUST00000102205 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-6-201ENSMUST00000177790 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-3-201ENSMUST00000178082 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-7-201ENSMUST00000178635 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-10-201ENSMUST00000179320 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-5-201ENSMUST00000179352 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-2-201ENSMUST00000179447 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-9-201ENSMUST00000179752 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-4-201ENSMUST00000179923 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-8-201ENSMUST00000180070 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir191-201ENSMUST00000196210 74 ntBASIC0.13□□□□□ -2.39
ShhQ62226 CT571266.1-201ENSMUST00000222859 153 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Gm25619-201ENSMUST00000122621 104 ntBASIC0.12□□□□□ -2.39
ShhQ62226 Gm27549-201ENSMUST00000183508 62 ntBASIC0.12□□□□□ -2.39
ShhQ62226 Mir6915-201ENSMUST00000198839 69 ntBASIC0.12□□□□□ -2.39
ShhQ62226 Gm25296-201ENSMUST00000082566 67 ntBASIC0.12□□□□□ -2.39
ShhQ62226 Gm24796-201ENSMUST00000104007 107 ntBASIC0.11□□□□□ -2.39
ShhQ62226 Gm25309-201ENSMUST00000116728 126 ntBASIC0.11□□□□□ -2.39
ShhQ62226 Mir126a-201ENSMUST00000083606 73 ntBASIC0.11□□□□□ -2.39
ShhQ62226 Gm24218-201ENSMUST00000180163 105 ntBASIC0.1□□□□□ -2.39
ShhQ62226 Gm24134-201ENSMUST00000083361 71 ntBASIC0.1□□□□□ -2.39
ShhQ62226 Mirlet7d-201ENSMUST00000083519 103 ntBASIC0.1□□□□□ -2.39
ShhQ62226 Gm25609-201ENSMUST00000104019 104 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm24868-201ENSMUST00000157265 136 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm22077-201ENSMUST00000157594 93 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm24199-201ENSMUST00000157808 136 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm24077-201ENSMUST00000158183 136 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Ranbp2-ps1-201ENSMUST00000184001 403 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm37750-201ENSMUST00000193563 129 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Mir327-201ENSMUST00000199328 69 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm22805-201ENSMUST00000082739 107 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Mir382-201ENSMUST00000083494 76 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm22757-201ENSMUST00000102279 96 ntBASIC0.08□□□□□ -2.4
ShhQ62226 Gm25112-201ENSMUST00000122680 104 ntBASIC0.08□□□□□ -2.4
ShhQ62226 Gm26104-201ENSMUST00000157250 108 ntBASIC0.08□□□□□ -2.4
ShhQ62226 Gm22327-201ENSMUST00000158899 108 ntBASIC0.08□□□□□ -2.4
ShhQ62226 Gm22455-201ENSMUST00000082580 71 ntBASIC0.08□□□□□ -2.4
ShhQ62226 n-R5s171-201ENSMUST00000104128 79 ntBASIC0.07□□□□□ -2.4
ShhQ62226 Gm25964-201ENSMUST00000157171 97 ntBASIC0.07□□□□□ -2.4
ShhQ62226 Gm25440-201ENSMUST00000158279 154 ntBASIC0.07□□□□□ -2.4
ShhQ62226 Gm45655-201ENSMUST00000211625 160 ntBASIC0.07□□□□□ -2.4
ShhQ62226 AC129019.2-201ENSMUST00000222063 202 ntBASIC0.07□□□□□ -2.4
ShhQ62226 Gm22368-201ENSMUST00000102416 109 ntBASIC0.06□□□□□ -2.4
ShhQ62226 Gm25275-201ENSMUST00000104297 129 ntBASIC0.06□□□□□ -2.4
ShhQ62226 Snord50a-201ENSMUST00000178154 72 ntBASIC0.06□□□□□ -2.4
ShhQ62226 Gm24463-201ENSMUST00000178417 72 ntBASIC0.06□□□□□ -2.4
ShhQ62226 Gm22458-201ENSMUST00000082576 107 ntBASIC0.05□□□□□ -2.4
ShhQ62226 Snord85-201ENSMUST00000083262 73 ntBASIC0.05□□□□□ -2.4
ShhQ62226 Mir672-201ENSMUST00000102331 100 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm25061-201ENSMUST00000104665 107 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm25542-201ENSMUST00000116889 94 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Mir466m-201ENSMUST00000175052 84 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm23159-201ENSMUST00000175088 77 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Snora26-201ENSMUST00000175614 121 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm38208-201ENSMUST00000192476 114 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm25644-201ENSMUST00000083209 107 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm22489-201ENSMUST00000116813 62 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Gm24064-201ENSMUST00000157486 106 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Gm22838-201ENSMUST00000158437 99 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Mir344-2-201ENSMUST00000175446 80 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Gm23442-201ENSMUST00000082919 134 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Mir3071-201ENSMUST00000093621 80 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Gm22087-201ENSMUST00000158339 88 ntBASIC0.02□□□□□ -2.41
ShhQ62226 Gm27937-201ENSMUST00000183605 88 ntBASIC0.02□□□□□ -2.41
ShhQ62226 Mir7673-201ENSMUST00000184567 64 ntBASIC0.02□□□□□ -2.41
ShhQ62226 Gm25703-201ENSMUST00000083123 151 ntBASIC0.02□□□□□ -2.41
ShhQ62226 Gm25522-201ENSMUST00000158394 105 ntBASIC0.01□□□□□ -2.41
ShhQ62226 Gm22413-201ENSMUST00000175465 85 ntBASIC0.01□□□□□ -2.41
ShhQ62226 Gm25740-201ENSMUST00000180247 107 ntBASIC0.01□□□□□ -2.41
ShhQ62226 Gm26499-201ENSMUST00000178544 79 ntBASIC0□□□□□ -2.41
ShhQ62226 Gm26096-201ENSMUST00000179084 79 ntBASIC0□□□□□ -2.41
ShhQ62226 Mir7651-201ENSMUST00000184154 64 ntBASIC0□□□□□ -2.41
ShhQ62226 Gm22459-201ENSMUST00000082577 108 ntBASIC0□□□□□ -2.41
ShhQ62226 Gm25186-201ENSMUST00000083909 108 ntBASIC0□□□□□ -2.41
ShhQ62226 Mir741-201ENSMUST00000103931 71 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm23715-201ENSMUST00000157354 106 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm22942-201ENSMUST00000158563 124 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Snord49b-201ENSMUST00000082503 72 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 n-R5s42-201ENSMUST00000082697 104 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm25854-201ENSMUST00000082792 72 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm24256-201ENSMUST00000083696 84 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm22827-201ENSMUST00000083766 107 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm24843-201ENSMUST00000158682 76 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 76,532 protein–RNA pairs in 143.5 ms