Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm22723-201ENSMUST00000083820 129 ntBASIC1.73□□□□□ -2.13
Rnf40Q3U319 Gm27980-201ENSMUST00000184094 169 ntBASIC1.72□□□□□ -2.13
Rnf40Q3U319 AL772271.1-201ENSMUST00000196848 65 ntBASIC1.72□□□□□ -2.13
Rnf40Q3U319 Gm22746-201ENSMUST00000082494 107 ntBASIC1.72□□□□□ -2.13
Rnf40Q3U319 Snord57-201ENSMUST00000083338 72 ntBASIC1.72□□□□□ -2.13
Rnf40Q3U319 Gm43960-201ENSMUST00000204249 5020 ntBASIC1.72□□□□□ -2.13
Rnf40Q3U319 Gm26181-201ENSMUST00000157687 106 ntBASIC1.71□□□□□ -2.14
Rnf40Q3U319 Gm23853-201ENSMUST00000158375 104 ntBASIC1.71□□□□□ -2.14
Rnf40Q3U319 Gm16399-201ENSMUST00000181423 219 ntBASIC1.71□□□□□ -2.14
Rnf40Q3U319 Gm23109-201ENSMUST00000116867 126 ntBASIC1.7□□□□□ -2.14
Rnf40Q3U319 Gm23955-201ENSMUST00000157214 100 ntBASIC1.7□□□□□ -2.14
Rnf40Q3U319 Gm22965-201ENSMUST00000157958 101 ntBASIC1.7□□□□□ -2.14
Rnf40Q3U319 Gm24174-201ENSMUST00000158933 111 ntBASIC1.7□□□□□ -2.14
Rnf40Q3U319 Mir717-201ENSMUST00000102259 109 ntBASIC1.69□□□□□ -2.14
Rnf40Q3U319 Gm23036-201ENSMUST00000157885 99 ntBASIC1.69□□□□□ -2.14
Rnf40Q3U319 Gm25222-201ENSMUST00000158199 126 ntBASIC1.69□□□□□ -2.14
Rnf40Q3U319 Gm25307-201ENSMUST00000158885 106 ntBASIC1.69□□□□□ -2.14
Rnf40Q3U319 Mir7225-201ENSMUST00000184178 54 ntBASIC1.69□□□□□ -2.14
Rnf40Q3U319 Gm23766-201ENSMUST00000103894 80 ntBASIC1.68□□□□□ -2.14
Rnf40Q3U319 Mir3079-201ENSMUST00000175428 90 ntBASIC1.68□□□□□ -2.14
Rnf40Q3U319 Mir9-3-201ENSMUST00000175497 90 ntBASIC1.68□□□□□ -2.14
Rnf40Q3U319 Mir7678-201ENSMUST00000185076 71 ntBASIC1.68□□□□□ -2.14
Rnf40Q3U319 Gm45125-201ENSMUST00000206908 151 ntBASIC1.67□□□□□ -2.14
Rnf40Q3U319 AC168062.3-201ENSMUST00000227025 165 ntBASIC1.67□□□□□ -2.14
Rnf40Q3U319 Gm382-201ENSMUST00000096332 4070 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
Rnf40Q3U319 Gm25279-201ENSMUST00000122608 133 ntBASIC1.66□□□□□ -2.14
Rnf40Q3U319 Gm24710-201ENSMUST00000175235 101 ntBASIC1.66□□□□□ -2.14
Rnf40Q3U319 Gm23017-201ENSMUST00000177583 72 ntBASIC1.66□□□□□ -2.14
Rnf40Q3U319 Gm24135-201ENSMUST00000179085 101 ntBASIC1.66□□□□□ -2.14
Rnf40Q3U319 Gm25820-201ENSMUST00000198589 127 ntBASIC1.66□□□□□ -2.14
Rnf40Q3U319 Gm44962-201ENSMUST00000206460 279 ntBASIC1.66□□□□□ -2.14
Rnf40Q3U319 A730009L09Rik-202ENSMUST00000210306 201 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
Rnf40Q3U319 Gm24394-201ENSMUST00000158141 123 ntBASIC1.65□□□□□ -2.15
Rnf40Q3U319 Gm25715-201ENSMUST00000158627 125 ntBASIC1.65□□□□□ -2.15
Rnf40Q3U319 Gm25993-201ENSMUST00000175391 80 ntBASIC1.65□□□□□ -2.15
Rnf40Q3U319 Gm27898-201ENSMUST00000183987 80 ntBASIC1.65□□□□□ -2.15
Rnf40Q3U319 Mir8116-201ENSMUST00000184134 97 ntBASIC1.65□□□□□ -2.15
Rnf40Q3U319 Vmn1r75-203ENSMUST00000226855 6548 ntAPPRIS P2 BASIC1.65□□□□□ -2.15
Rnf40Q3U319 Gm10945-201ENSMUST00000105596 60 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
Rnf40Q3U319 Gm24895-201ENSMUST00000122742 74 ntBASIC1.64□□□□□ -2.15
Rnf40Q3U319 Mir669n-201ENSMUST00000158636 54 ntBASIC1.64□□□□□ -2.15
Rnf40Q3U319 Gm24508-201ENSMUST00000180104 107 ntBASIC1.64□□□□□ -2.15
Rnf40Q3U319 Gm25128-201ENSMUST00000083339 76 ntBASIC1.64□□□□□ -2.15
Rnf40Q3U319 Pcdh11x-208ENSMUST00000193899 5394 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
Rnf40Q3U319 Gm22233-201ENSMUST00000157464 114 ntBASIC1.63□□□□□ -2.15
Rnf40Q3U319 Gm25868-201ENSMUST00000158253 114 ntBASIC1.63□□□□□ -2.15
Rnf40Q3U319 Mir6352-201ENSMUST00000184495 116 ntBASIC1.63□□□□□ -2.15
Rnf40Q3U319 Zfp654-201ENSMUST00000052588 4741 ntAPPRIS P3 TSL 1 (best) BASIC1.63□□□□□ -2.15
Rnf40Q3U319 Gm25326-201ENSMUST00000101903 107 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Mir301b-201ENSMUST00000102333 97 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Mir758-201ENSMUST00000103260 81 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Gm23573-201ENSMUST00000104408 107 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Gm26052-201ENSMUST00000104646 84 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Gm23180-201ENSMUST00000158686 125 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Mir3070a-201ENSMUST00000175468 89 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Gm23416-201ENSMUST00000175520 95 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Gm23267-201ENSMUST00000178490 132 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Mir7010-201ENSMUST00000183464 63 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Gm25138-201ENSMUST00000083248 136 ntBASIC1.62□□□□□ -2.15
Rnf40Q3U319 Olfr820-202ENSMUST00000214917 4701 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
Rnf40Q3U319 Gm24796-201ENSMUST00000104007 107 ntBASIC1.6□□□□□ -2.15
Rnf40Q3U319 Gm25495-201ENSMUST00000104431 131 ntBASIC1.6□□□□□ -2.15
Rnf40Q3U319 n-R5s157-201ENSMUST00000122543 121 ntBASIC1.6□□□□□ -2.15
Rnf40Q3U319 Gm23714-201ENSMUST00000179259 105 ntBASIC1.6□□□□□ -2.15
Rnf40Q3U319 Mir3087-201ENSMUST00000199405 56 ntBASIC1.6□□□□□ -2.15
Rnf40Q3U319 Gm22298-201ENSMUST00000082662 133 ntBASIC1.6□□□□□ -2.15
Rnf40Q3U319 Gm26922-201ENSMUST00000082687 72 ntBASIC1.6□□□□□ -2.15
Rnf40Q3U319 Gm25894-201ENSMUST00000083458 75 ntBASIC1.6□□□□□ -2.15
Rnf40Q3U319 Gm26338-201ENSMUST00000102372 110 ntBASIC1.59□□□□□ -2.15
Rnf40Q3U319 Scarna3b-201ENSMUST00000157533 139 ntBASIC1.59□□□□□ -2.15
Rnf40Q3U319 Gm26306-201ENSMUST00000157773 119 ntBASIC1.59□□□□□ -2.15
Rnf40Q3U319 Gm27263-201ENSMUST00000184760 76 ntBASIC1.59□□□□□ -2.15
Rnf40Q3U319 Gm42533-201ENSMUST00000196247 157 ntBASIC1.59□□□□□ -2.15
Rnf40Q3U319 Gm15115-201ENSMUST00000121145 264 ntBASIC1.58□□□□□ -2.16
Rnf40Q3U319 Gm24321-201ENSMUST00000175348 80 ntBASIC1.58□□□□□ -2.16
Rnf40Q3U319 Gm24638-201ENSMUST00000179807 132 ntBASIC1.58□□□□□ -2.16
Rnf40Q3U319 Gm27493-201ENSMUST00000184128 78 ntBASIC1.58□□□□□ -2.16
Rnf40Q3U319 Gm24942-201ENSMUST00000158328 114 ntBASIC1.57□□□□□ -2.16
Rnf40Q3U319 AC129019.2-201ENSMUST00000222063 202 ntBASIC1.57□□□□□ -2.16
Rnf40Q3U319 Gm23221-201ENSMUST00000158118 93 ntBASIC1.56□□□□□ -2.16
Rnf40Q3U319 Gm24076-201ENSMUST00000158179 94 ntBASIC1.55□□□□□ -2.16
Rnf40Q3U319 Gm22542-201ENSMUST00000158166 95 ntBASIC1.54□□□□□ -2.16
Rnf40Q3U319 Gm44327-201ENSMUST00000200068 117 ntBASIC1.54□□□□□ -2.16
Rnf40Q3U319 Gm22357-201ENSMUST00000082882 83 ntBASIC1.54□□□□□ -2.16
Rnf40Q3U319 Gm24920-201ENSMUST00000083018 85 ntBASIC1.54□□□□□ -2.16
Rnf40Q3U319 Snord13-201ENSMUST00000157627 104 ntBASIC1.53□□□□□ -2.16
Rnf40Q3U319 Gm23245-201ENSMUST00000083370 135 ntBASIC1.53□□□□□ -2.16
Rnf40Q3U319 Mir23a-201ENSMUST00000083677 75 ntBASIC1.53□□□□□ -2.16
Rnf40Q3U319 n-R5s6-201ENSMUST00000122663 88 ntBASIC1.52□□□□□ -2.17
Rnf40Q3U319 Mir7679-201ENSMUST00000183379 63 ntBASIC1.52□□□□□ -2.17
Rnf40Q3U319 Mir15a-201ENSMUST00000175266 84 ntBASIC1.51□□□□□ -2.17
Rnf40Q3U319 Gm6607-201ENSMUST00000215035 328 ntBASIC1.51□□□□□ -2.17
Rnf40Q3U319 AC125190.3-201ENSMUST00000223224 121 ntBASIC1.51□□□□□ -2.17
Rnf40Q3U319 Gm25296-201ENSMUST00000082566 67 ntBASIC1.51□□□□□ -2.17
Rnf40Q3U319 Gm24555-201ENSMUST00000104548 124 ntBASIC1.5□□□□□ -2.17
Rnf40Q3U319 Gm27711-201ENSMUST00000183802 118 ntBASIC1.5□□□□□ -2.17
Rnf40Q3U319 Gm27587-201ENSMUST00000185116 163 ntBASIC1.5□□□□□ -2.17
Rnf40Q3U319 Gm25832-201ENSMUST00000104140 130 ntBASIC1.49□□□□□ -2.17
Rnf40Q3U319 Gm25166-201ENSMUST00000158909 111 ntBASIC1.49□□□□□ -2.17
Rnf40Q3U319 Gm23967-201ENSMUST00000175062 78 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 76,532 protein–RNA pairs in 172.1 ms