Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Prpf40aQ9R1C7 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Gm5417-201ENSMUST00000079706 384 ntBASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Prpf40aQ9R1C7 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Prpf40aQ9R1C7 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Gm17661-201ENSMUST00000170317 270 ntBASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Prpf40aQ9R1C7 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Prpf40aQ9R1C7 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Gm7638-201ENSMUST00000121348 967 ntBASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Gm9731-201ENSMUST00000209480 747 ntBASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.56■□□□□ 0.56
Prpf40aQ9R1C7 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms