Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC23.22■■□□□ 1.31
Scn4aQ9ER60 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC23.22■■□□□ 1.31
Scn4aQ9ER60 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn4aQ9ER60 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn4aQ9ER60 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn4aQ9ER60 AC159295.1-201ENSMUST00000225326 940 ntBASIC23.21■■□□□ 1.31
Scn4aQ9ER60 AC155252.2-201ENSMUST00000226946 680 ntBASIC23.21■■□□□ 1.31
Scn4aQ9ER60 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn4aQ9ER60 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn4aQ9ER60 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
Scn4aQ9ER60 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Scn4aQ9ER60 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.31
Scn4aQ9ER60 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.31
Scn4aQ9ER60 Notumos-201ENSMUST00000151998 2659 ntBASIC23.2■■□□□ 1.3
Scn4aQ9ER60 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Scn4aQ9ER60 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Scn4aQ9ER60 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Scn4aQ9ER60 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Scn4aQ9ER60 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Scn4aQ9ER60 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Scn4aQ9ER60 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Gm17968-201ENSMUST00000194902 784 ntBASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Mir1895-201ENSMUST00000122615 79 ntBASIC23.19■■□□□ 1.3
Scn4aQ9ER60 AC131187.1-201ENSMUST00000224567 809 ntBASIC23.19■■□□□ 1.3
Scn4aQ9ER60 AC154572.2-201ENSMUST00000225105 997 ntBASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Gm5837-201ENSMUST00000191844 1369 ntBASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Scn4aQ9ER60 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Golph3-205ENSMUST00000228671 2842 ntBASIC23.18■■□□□ 1.3
Scn4aQ9ER60 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Gm13597-201ENSMUST00000121239 375 ntBASIC23.18■■□□□ 1.3
Scn4aQ9ER60 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Scn4aQ9ER60 Gm5784-201ENSMUST00000179344 2478 ntBASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Gm27622-201ENSMUST00000183779 60 ntBASIC23.17■■□□□ 1.3
Scn4aQ9ER60 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC23.17■■□□□ 1.3
Scn4aQ9ER60 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Scn4aQ9ER60 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Scn4aQ9ER60 Gm17271-201ENSMUST00000165535 355 ntBASIC23.16■■□□□ 1.3
Scn4aQ9ER60 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC23.16■■□□□ 1.3
Scn4aQ9ER60 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Scn4aQ9ER60 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm13332-201ENSMUST00000120451 1398 ntBASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm15442-201ENSMUST00000117905 1527 ntBASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm27646-201ENSMUST00000183989 110 ntBASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm27300-201ENSMUST00000184085 97 ntBASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Gm27335-201ENSMUST00000184758 97 ntBASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Scn4aQ9ER60 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn4aQ9ER60 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn4aQ9ER60 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn4aQ9ER60 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
Scn4aQ9ER60 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
Scn4aQ9ER60 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC23.14■■□□□ 1.3
Scn4aQ9ER60 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Scn4aQ9ER60 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Scn4aQ9ER60 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Scn4aQ9ER60 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC23.14■■□□□ 1.29
Scn4aQ9ER60 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC23.14■■□□□ 1.29
Scn4aQ9ER60 Gm8825-201ENSMUST00000182565 998 ntBASIC23.14■■□□□ 1.29
Scn4aQ9ER60 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC23.14■■□□□ 1.29
Scn4aQ9ER60 Gm44492-201ENSMUST00000197012 141 ntBASIC23.14■■□□□ 1.29
Scn4aQ9ER60 AC159106.1-201ENSMUST00000224421 690 ntBASIC23.14■■□□□ 1.29
Scn4aQ9ER60 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Scn4aQ9ER60 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Scn4aQ9ER60 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn4aQ9ER60 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Scn4aQ9ER60 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC23.13■■□□□ 1.29
Scn4aQ9ER60 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Scn4aQ9ER60 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms