Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 H2-Pa-201ENSMUST00000182803 626 ntBASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Gm8655-201ENSMUST00000221159 852 ntBASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf1Q9EPU0 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Gm13823-201ENSMUST00000119930 345 ntBASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Gm11764-201ENSMUST00000120221 623 ntBASIC19.22■□□□□ 0.67
Upf1Q9EPU0 AC159295.1-201ENSMUST00000225326 940 ntBASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Upf1Q9EPU0 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.21■□□□□ 0.67
Upf1Q9EPU0 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Upf1Q9EPU0 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Upf1Q9EPU0 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Fgf17-202ENSMUST00000227123 1336 ntBASIC19.2■□□□□ 0.66
Upf1Q9EPU0 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf1Q9EPU0 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Gm27437-201ENSMUST00000183429 107 ntBASIC19.19■□□□□ 0.66
Upf1Q9EPU0 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf1Q9EPU0 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Upf1Q9EPU0 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Upf1Q9EPU0 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Upf1Q9EPU0 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf1Q9EPU0 Gm5866-201ENSMUST00000177881 973 ntBASIC19.17■□□□□ 0.66
Upf1Q9EPU0 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Upf1Q9EPU0 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Upf1Q9EPU0 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms