Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdc40Q9DC48 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Gm43808-201ENSMUST00000202534 2065 ntBASIC15.71■□□□□ 0.11
Cdc40Q9DC48 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Gm43353-201ENSMUST00000199224 1295 ntBASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Gm19721-201ENSMUST00000195284 1764 ntBASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdc40Q9DC48 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Cdc40Q9DC48 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC15.71■□□□□ 0.1
Cdc40Q9DC48 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Mir5130-201ENSMUST00000175160 84 ntBASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 AC125311.2-201ENSMUST00000227477 1940 ntBASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cdc40Q9DC48 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Gm2274-201ENSMUST00000184539 609 ntBASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Gm7367-201ENSMUST00000057611 492 ntBASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdc40Q9DC48 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Gm6659-201ENSMUST00000174752 547 ntBASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cdc40Q9DC48 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms