Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ddx56Q9D0R4 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ddx56Q9D0R4 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ddx56Q9D0R4 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ddx56Q9D0R4 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ddx56Q9D0R4 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ddx56Q9D0R4 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ddx56Q9D0R4 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Ddx56Q9D0R4 Gm30025-201ENSMUST00000218555 728 ntBASIC17.74■□□□□ 0.43
Ddx56Q9D0R4 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ddx56Q9D0R4 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ddx56Q9D0R4 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ddx56Q9D0R4 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ddx56Q9D0R4 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ddx56Q9D0R4 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Gm4217-201ENSMUST00000182243 1002 ntBASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ddx56Q9D0R4 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms