Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Mir8112-201ENSMUST00000184382 131 ntBASIC16.49■□□□□ 0.23
Msh4Q99MT2 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC16.49■□□□□ 0.23
Msh4Q99MT2 AC153881.2-201ENSMUST00000214877 204 ntBASIC16.49■□□□□ 0.23
Msh4Q99MT2 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Msh4Q99MT2 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Gm43799-201ENSMUST00000201845 579 ntBASIC16.48■□□□□ 0.23
Msh4Q99MT2 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Msh4Q99MT2 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.47■□□□□ 0.23
Msh4Q99MT2 AC158538.1-201ENSMUST00000225870 294 ntBASIC16.47■□□□□ 0.23
Msh4Q99MT2 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Msh4Q99MT2 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.46■□□□□ 0.23
Msh4Q99MT2 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Msh4Q99MT2 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Msh4Q99MT2 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Msh4Q99MT2 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Msh4Q99MT2 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Gm38027-201ENSMUST00000192315 235 ntBASIC16.45■□□□□ 0.22
Msh4Q99MT2 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC16.45■□□□□ 0.22
Msh4Q99MT2 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC16.45■□□□□ 0.22
Msh4Q99MT2 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Msh4Q99MT2 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms