Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Hmgb1P63158 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Gm9731-201ENSMUST00000209480 747 ntBASIC18.57■□□□□ 0.56
Hmgb1P63158 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Hmgb1P63158 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.57■□□□□ 0.56
Hmgb1P63158 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.57■□□□□ 0.56
Hmgb1P63158 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb1P63158 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Hmgb1P63158 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Hmgb1P63158 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.56■□□□□ 0.56
Hmgb1P63158 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
Hmgb1P63158 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Hmgb1P63158 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb1P63158 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Hmgb1P63158 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.55■□□□□ 0.56
Hmgb1P63158 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.55■□□□□ 0.56
Hmgb1P63158 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC18.55■□□□□ 0.56
Hmgb1P63158 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Hmgb1P63158 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.55■□□□□ 0.56
Hmgb1P63158 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.55■□□□□ 0.56
Hmgb1P63158 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.55■□□□□ 0.56
Hmgb1P63158 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb1P63158 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb1P63158 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.54■□□□□ 0.56
Hmgb1P63158 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.53■□□□□ 0.56
Hmgb1P63158 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.53■□□□□ 0.56
Hmgb1P63158 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb1P63158 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.53■□□□□ 0.56
Hmgb1P63158 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC18.53■□□□□ 0.56
Hmgb1P63158 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.53■□□□□ 0.56
Hmgb1P63158 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms