Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ercc3P49135 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC20.06■□□□□ 0.8
Ercc3P49135 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.06■□□□□ 0.8
Ercc3P49135 Gm18958-201ENSMUST00000174258 762 ntBASIC20.06■□□□□ 0.8
Ercc3P49135 Gm45058-201ENSMUST00000205810 766 ntBASIC20.06■□□□□ 0.8
Ercc3P49135 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.06■□□□□ 0.8
Ercc3P49135 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
Ercc3P49135 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ercc3P49135 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.06■□□□□ 0.8
Ercc3P49135 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ercc3P49135 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Wnt10b-204ENSMUST00000226655 1807 ntBASIC20.05■□□□□ 0.8
Ercc3P49135 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.05■□□□□ 0.8
Ercc3P49135 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ercc3P49135 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Ercc3P49135 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC20.04■□□□□ 0.8
Ercc3P49135 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC20.04■□□□□ 0.8
Ercc3P49135 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
Ercc3P49135 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20.04■□□□□ 0.8
Ercc3P49135 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ercc3P49135 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC20.03■□□□□ 0.8
Ercc3P49135 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Ercc3P49135 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC20.03■□□□□ 0.8
Ercc3P49135 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Ercc3P49135 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ercc3P49135 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Ercc3P49135 Spsb2-203ENSMUST00000112473 1322 ntBASIC20.02■□□□□ 0.8
Ercc3P49135 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC20.02■□□□□ 0.8
Ercc3P49135 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Ercc3P49135 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC20.02■□□□□ 0.8
Ercc3P49135 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Ercc3P49135 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Ercc3P49135 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ercc3P49135 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ercc3P49135 Gm7292-201ENSMUST00000194706 2527 ntBASIC20.02■□□□□ 0.79
Ercc3P49135 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ercc3P49135 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Ercc3P49135 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.02■□□□□ 0.79
Ercc3P49135 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ercc3P49135 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ercc3P49135 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ercc3P49135 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Ercc3P49135 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ercc3P49135 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
Ercc3P49135 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Ercc3P49135 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ercc3P49135 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC20.01■□□□□ 0.79
Ercc3P49135 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ercc3P49135 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ercc3P49135 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Ercc3P49135 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Ercc3P49135 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20■□□□□ 0.79
Ercc3P49135 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC20■□□□□ 0.79
Ercc3P49135 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20■□□□□ 0.79
Ercc3P49135 Gm7213-201ENSMUST00000215977 950 ntBASIC20■□□□□ 0.79
Ercc3P49135 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms