Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.25■□□□□ 0.83
Rfx1P48377 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Rfx1P48377 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Rfx1P48377 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Rfx1P48377 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Rfx1P48377 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC20.25■□□□□ 0.83
Rfx1P48377 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rfx1P48377 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Mir6349-201ENSMUST00000184059 97 ntBASIC20.24■□□□□ 0.83
Rfx1P48377 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.24■□□□□ 0.83
Rfx1P48377 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Rfx1P48377 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
Rfx1P48377 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Rfx1P48377 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Rfx1P48377 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rfx1P48377 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Rfx1P48377 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.23■□□□□ 0.83
Rfx1P48377 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC20.23■□□□□ 0.83
Rfx1P48377 Mir5133-201ENSMUST00000174955 77 ntBASIC20.23■□□□□ 0.83
Rfx1P48377 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC20.23■□□□□ 0.83
Rfx1P48377 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Rfx1P48377 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Gm45560-201ENSMUST00000211492 1472 ntBASIC20.23■□□□□ 0.83
Rfx1P48377 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rfx1P48377 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC20.22■□□□□ 0.83
Rfx1P48377 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
Rfx1P48377 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Rfx1P48377 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.22■□□□□ 0.83
Rfx1P48377 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Rfx1P48377 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Gm10138-203ENSMUST00000206952 366 ntBASIC20.22■□□□□ 0.83
Rfx1P48377 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Rfx1P48377 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Rfx1P48377 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rfx1P48377 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Rfx1P48377 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC20.21■□□□□ 0.83
Rfx1P48377 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Rfx1P48377 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC20.21■□□□□ 0.83
Rfx1P48377 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Gm18284-201ENSMUST00000172604 624 ntBASIC20.21■□□□□ 0.83
Rfx1P48377 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC20.21■□□□□ 0.83
Rfx1P48377 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rfx1P48377 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rfx1P48377 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms