Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col3a1P08121 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col3a1P08121 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC20.17■□□□□ 0.82
Col3a1P08121 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC20.17■□□□□ 0.82
Col3a1P08121 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Gm11620-201ENSMUST00000118770 1845 ntBASIC20.16■□□□□ 0.82
Col3a1P08121 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC20.16■□□□□ 0.82
Col3a1P08121 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Gm6598-201ENSMUST00000202719 2615 ntBASIC20.16■□□□□ 0.82
Col3a1P08121 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC20.16■□□□□ 0.82
Col3a1P08121 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 AC153794.1-201ENSMUST00000169148 126 ntBASIC20.16■□□□□ 0.82
Col3a1P08121 Gm44430-201ENSMUST00000203376 995 ntBASIC20.16■□□□□ 0.82
Col3a1P08121 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC20.16■□□□□ 0.82
Col3a1P08121 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col3a1P08121 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.15■□□□□ 0.82
Col3a1P08121 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col3a1P08121 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col3a1P08121 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col3a1P08121 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Col3a1P08121 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col3a1P08121 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col3a1P08121 Gm10052-201ENSMUST00000168019 960 ntBASIC20.15■□□□□ 0.82
Col3a1P08121 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col3a1P08121 Gm7729-201ENSMUST00000050143 801 ntBASIC20.15■□□□□ 0.82
Col3a1P08121 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col3a1P08121 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col3a1P08121 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col3a1P08121 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Col3a1P08121 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Col3a1P08121 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col3a1P08121 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col3a1P08121 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col3a1P08121 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col3a1P08121 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.14■□□□□ 0.81
Col3a1P08121 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col3a1P08121 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col3a1P08121 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col3a1P08121 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC20.14■□□□□ 0.81
Col3a1P08121 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col3a1P08121 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Col3a1P08121 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC20.13■□□□□ 0.81
Col3a1P08121 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC20.13■□□□□ 0.81
Col3a1P08121 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col3a1P08121 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC20.12■□□□□ 0.81
Col3a1P08121 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC20.12■□□□□ 0.81
Col3a1P08121 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 AC164629.2-201ENSMUST00000217916 270 ntBASIC20.12■□□□□ 0.81
Col3a1P08121 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.12■□□□□ 0.81
Col3a1P08121 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col3a1P08121 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col3a1P08121 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col3a1P08121 Rprl3-201ENSMUST00000157400 290 ntBASIC20.11■□□□□ 0.81
Col3a1P08121 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col3a1P08121 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC20.11■□□□□ 0.81
Col3a1P08121 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
Col3a1P08121 Mzt1-203ENSMUST00000227948 952 ntBASIC20.11■□□□□ 0.81
Col3a1P08121 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col3a1P08121 Gm15442-201ENSMUST00000117905 1527 ntBASIC20.11■□□□□ 0.81
Col3a1P08121 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col3a1P08121 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col3a1P08121 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Col3a1P08121 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col3a1P08121 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Col3a1P08121 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col3a1P08121 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col3a1P08121 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col3a1P08121 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col3a1P08121 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Col3a1P08121 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC20.1■□□□□ 0.81
Col3a1P08121 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col3a1P08121 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col3a1P08121 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col3a1P08121 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col3a1P08121 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms