Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 AC153881.1-201ENSMUST00000214448 284 ntBASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Pcdhgb8A0A140LI48 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Pcdhgb8A0A140LI48 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Mir1199-201ENSMUST00000117015 119 ntBASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Pcdhgb8A0A140LI48 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Pcdhgb8A0A140LI48 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Gm13216-201ENSMUST00000117145 591 ntBASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Gm26596-201ENSMUST00000180464 2655 ntBASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Pcdhgb8A0A140LI48 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Mir6349-201ENSMUST00000184059 97 ntBASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Pcdhgb8A0A140LI48 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms