Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Mup-ps5-201ENSMUST00000118667 99 ntBASIC0.64□□□□□ -2.31
ShhQ62226 Gm24686-201ENSMUST00000157755 93 ntBASIC0.64□□□□□ -2.31
ShhQ62226 Mir6364-201ENSMUST00000183396 86 ntBASIC0.64□□□□□ -2.31
ShhQ62226 Sult1c2-ps2-201ENSMUST00000196414 276 ntBASIC0.64□□□□□ -2.31
ShhQ62226 AC124196.2-201ENSMUST00000224835 145 ntBASIC0.64□□□□□ -2.31
ShhQ62226 mt-Tc-201ENSMUST00000082400 66 ntBASIC0.64□□□□□ -2.31
ShhQ62226 Gm24258-201ENSMUST00000083739 133 ntBASIC0.64□□□□□ -2.31
ShhQ62226 Mir1197-201ENSMUST00000117037 120 ntBASIC0.63□□□□□ -2.31
ShhQ62226 Gm27717-201ENSMUST00000183933 151 ntBASIC0.63□□□□□ -2.31
ShhQ62226 Gm43927-201ENSMUST00000204599 117 ntBASIC0.63□□□□□ -2.31
ShhQ62226 AC113441.1-201ENSMUST00000223464 134 ntBASIC0.63□□□□□ -2.31
ShhQ62226 Mir216a-201ENSMUST00000083605 72 ntBASIC0.63□□□□□ -2.31
ShhQ62226 Gm23531-201ENSMUST00000104567 68 ntBASIC0.62□□□□□ -2.31
ShhQ62226 Gm25393-201ENSMUST00000157336 285 ntBASIC0.62□□□□□ -2.31
ShhQ62226 Gm24801-201ENSMUST00000178503 105 ntBASIC0.62□□□□□ -2.31
ShhQ62226 Gm22652-201ENSMUST00000083207 131 ntBASIC0.62□□□□□ -2.31
ShhQ62226 Gm22088-201ENSMUST00000158341 117 ntBASIC0.61□□□□□ -2.31
ShhQ62226 mt-Tm-201ENSMUST00000082395 69 ntBASIC0.61□□□□□ -2.31
ShhQ62226 Gm14400-201ENSMUST00000117234 2135 ntBASIC0.61□□□□□ -2.31
ShhQ62226 Gm23605-201ENSMUST00000157255 127 ntBASIC0.6□□□□□ -2.31
ShhQ62226 Gm23278-201ENSMUST00000157911 143 ntBASIC0.6□□□□□ -2.31
ShhQ62226 Gm24321-201ENSMUST00000175348 80 ntBASIC0.6□□□□□ -2.31
ShhQ62226 Mir6237-201ENSMUST00000183808 91 ntBASIC0.6□□□□□ -2.31
ShhQ62226 Gm27943-201ENSMUST00000184844 116 ntBASIC0.6□□□□□ -2.31
ShhQ62226 AC132833.2-201ENSMUST00000228699 157 ntBASIC0.6□□□□□ -2.31
ShhQ62226 Gm25894-201ENSMUST00000083458 75 ntBASIC0.6□□□□□ -2.31
ShhQ62226 Mir200a-201ENSMUST00000083466 90 ntBASIC0.6□□□□□ -2.31
ShhQ62226 mt-Tn-201ENSMUST00000082399 71 ntBASIC0.59□□□□□ -2.31
ShhQ62226 Mir196a-2-201ENSMUST00000083554 85 ntBASIC0.59□□□□□ -2.31
ShhQ62226 Snora2b-201ENSMUST00000084005 137 ntBASIC0.59□□□□□ -2.31
ShhQ62226 Gm22048-201ENSMUST00000104721 89 ntBASIC0.58□□□□□ -2.32
ShhQ62226 Gm16265-201ENSMUST00000134558 108 ntBASIC0.58□□□□□ -2.32
ShhQ62226 AC157602.1-201ENSMUST00000197446 105 ntBASIC0.58□□□□□ -2.32
ShhQ62226 Gm43907-201ENSMUST00000203128 117 ntBASIC0.58□□□□□ -2.32
ShhQ62226 AC160962.3-201ENSMUST00000225914 112 ntBASIC0.58□□□□□ -2.32
ShhQ62226 Zfp813-ps-201ENSMUST00000186652 2506 ntBASIC0.58□□□□□ -2.32
ShhQ62226 Gm11749-201ENSMUST00000127327 184 ntTSL 2 BASIC0.57□□□□□ -2.32
ShhQ62226 Gm23020-201ENSMUST00000158766 253 ntBASIC0.57□□□□□ -2.32
ShhQ62226 Gm23291-201ENSMUST00000175611 78 ntBASIC0.57□□□□□ -2.32
ShhQ62226 Gm24099-201ENSMUST00000083384 107 ntBASIC0.57□□□□□ -2.32
ShhQ62226 Gm24073-201ENSMUST00000158177 106 ntBASIC0.56□□□□□ -2.32
ShhQ62226 Mir509-201ENSMUST00000196089 75 ntBASIC0.56□□□□□ -2.32
ShhQ62226 Gm3702-201ENSMUST00000211754 346 ntBASIC0.56□□□□□ -2.32
ShhQ62226 AC153930.1-201ENSMUST00000220016 358 ntTSL 3 BASIC0.56□□□□□ -2.32
ShhQ62226 Mir141-201ENSMUST00000083540 72 ntBASIC0.56□□□□□ -2.32
ShhQ62226 Mir29a-201ENSMUST00000083676 88 ntBASIC0.56□□□□□ -2.32
ShhQ62226 Gm6358-201ENSMUST00000089101 156 ntAPPRIS ALT2 BASIC0.56□□□□□ -2.32
ShhQ62226 Gm26236-201ENSMUST00000175536 137 ntBASIC0.55□□□□□ -2.32
ShhQ62226 Gm26712-201ENSMUST00000180813 217 ntBASIC0.55□□□□□ -2.32
ShhQ62226 Gm23244-201ENSMUST00000083375 92 ntBASIC0.55□□□□□ -2.32
ShhQ62226 Gm22672-201ENSMUST00000104414 134 ntBASIC0.54□□□□□ -2.32
ShhQ62226 Gm22770-201ENSMUST00000158368 67 ntBASIC0.54□□□□□ -2.32
ShhQ62226 Gm26478-201ENSMUST00000122611 133 ntBASIC0.53□□□□□ -2.32
ShhQ62226 Mir5619-201ENSMUST00000176065 61 ntBASIC0.53□□□□□ -2.32
ShhQ62226 Mir7077-201ENSMUST00000183991 57 ntBASIC0.53□□□□□ -2.32
ShhQ62226 Gm44455-201ENSMUST00000200061 82 ntBASIC0.53□□□□□ -2.32
ShhQ62226 Gm26207-201ENSMUST00000082909 104 ntBASIC0.53□□□□□ -2.32
ShhQ62226 Gm382-201ENSMUST00000096332 4070 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
ShhQ62226 Gm25885-201ENSMUST00000157779 109 ntBASIC0.52□□□□□ -2.33
ShhQ62226 Gm24963-201ENSMUST00000157916 144 ntBASIC0.52□□□□□ -2.33
ShhQ62226 Gm26484-201ENSMUST00000158018 106 ntBASIC0.52□□□□□ -2.33
ShhQ62226 Mir7229-201ENSMUST00000197062 53 ntBASIC0.52□□□□□ -2.33
ShhQ62226 Mir6896-201ENSMUST00000198033 73 ntBASIC0.52□□□□□ -2.33
ShhQ62226 Olfr1099-202ENSMUST00000213456 4867 ntAPPRIS P1 TSL 5 BASIC0.52□□□□□ -2.33
ShhQ62226 Mir670-201ENSMUST00000102380 100 ntBASIC0.51□□□□□ -2.33
ShhQ62226 Gm23197-201ENSMUST00000158809 112 ntBASIC0.51□□□□□ -2.33
ShhQ62226 Mirlet7g-201ENSMUST00000083506 88 ntBASIC0.51□□□□□ -2.33
ShhQ62226 Gm24278-201ENSMUST00000104239 127 ntBASIC0.5□□□□□ -2.33
ShhQ62226 Gm26253-201ENSMUST00000122493 103 ntBASIC0.5□□□□□ -2.33
ShhQ62226 Snord2-201ENSMUST00000157899 69 ntBASIC0.5□□□□□ -2.33
ShhQ62226 Gm22522-201ENSMUST00000158271 151 ntBASIC0.5□□□□□ -2.33
ShhQ62226 Gm23261-201ENSMUST00000158316 136 ntBASIC0.49□□□□□ -2.33
ShhQ62226 Gm25366-201ENSMUST00000158845 124 ntBASIC0.49□□□□□ -2.33
ShhQ62226 Mir3473d-201ENSMUST00000175346 81 ntBASIC0.49□□□□□ -2.33
ShhQ62226 Mir3105-201ENSMUST00000175480 85 ntBASIC0.49□□□□□ -2.33
ShhQ62226 Mir6904-201ENSMUST00000183443 67 ntBASIC0.49□□□□□ -2.33
ShhQ62226 Gm22303-201ENSMUST00000082686 122 ntBASIC0.49□□□□□ -2.33
ShhQ62226 Gm24202-201ENSMUST00000082948 103 ntBASIC0.49□□□□□ -2.33
ShhQ62226 Gm24697-201ENSMUST00000083881 107 ntBASIC0.49□□□□□ -2.33
ShhQ62226 Gm22302-201ENSMUST00000082657 106 ntBASIC0.48□□□□□ -2.33
ShhQ62226 Mirlet7a-1-201ENSMUST00000083487 94 ntBASIC0.48□□□□□ -2.33
ShhQ62226 Gm23012-201ENSMUST00000104149 83 ntBASIC0.47□□□□□ -2.33
ShhQ62226 Gm24381-201ENSMUST00000122697 104 ntBASIC0.47□□□□□ -2.33
ShhQ62226 Gm22100-201ENSMUST00000157926 63 ntBASIC0.47□□□□□ -2.33
ShhQ62226 Gm26466-201ENSMUST00000179615 79 ntBASIC0.47□□□□□ -2.33
ShhQ62226 Gm43432-201ENSMUST00000196352 121 ntBASIC0.47□□□□□ -2.33
ShhQ62226 Gm44457-201ENSMUST00000198109 76 ntBASIC0.47□□□□□ -2.33
ShhQ62226 Mir224-201ENSMUST00000083608 82 ntBASIC0.47□□□□□ -2.33
ShhQ62226 Gm23790-201ENSMUST00000083013 107 ntBASIC0.46□□□□□ -2.34
ShhQ62226 Mir450b-201ENSMUST00000102095 82 ntBASIC0.45□□□□□ -2.34
ShhQ62226 Gm24983-201ENSMUST00000104457 69 ntBASIC0.45□□□□□ -2.34
ShhQ62226 Mir3083-201ENSMUST00000175377 64 ntBASIC0.45□□□□□ -2.34
ShhQ62226 CT030166.3-201ENSMUST00000223203 193 ntBASIC0.45□□□□□ -2.34
ShhQ62226 Gm25408-201ENSMUST00000104104 133 ntBASIC0.44□□□□□ -2.34
ShhQ62226 Gm23672-201ENSMUST00000157471 107 ntBASIC0.44□□□□□ -2.34
ShhQ62226 Gm22140-201ENSMUST00000158745 120 ntBASIC0.44□□□□□ -2.34
ShhQ62226 Gm44327-201ENSMUST00000200068 117 ntBASIC0.44□□□□□ -2.34
ShhQ62226 Gm44828-201ENSMUST00000203745 106 ntBASIC0.44□□□□□ -2.34
ShhQ62226 Gm45541-201ENSMUST00000210443 54 ntBASIC0.44□□□□□ -2.34
ShhQ62226 Gm24793-201ENSMUST00000104289 132 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 76,532 protein–RNA pairs in 136 ms