Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm6985-201ENSMUST00000121255 271 ntBASIC1.59□□□□□ -2.15
RaraP11416 Gm24221-201ENSMUST00000158833 313 ntBASIC1.59□□□□□ -2.15
RaraP11416 Gm24222-201ENSMUST00000158834 93 ntBASIC1.59□□□□□ -2.15
RaraP11416 Gm28794-201ENSMUST00000185276 136 ntBASIC1.59□□□□□ -2.15
RaraP11416 Gm24918-201ENSMUST00000083022 130 ntBASIC1.59□□□□□ -2.15
RaraP11416 AC164629.4-201ENSMUST00000218505 3247 ntBASIC1.59□□□□□ -2.16
RaraP11416 Gm23991-201ENSMUST00000117033 93 ntBASIC1.58□□□□□ -2.16
RaraP11416 Gm24895-201ENSMUST00000122742 74 ntBASIC1.58□□□□□ -2.16
RaraP11416 Mir7059-201ENSMUST00000184825 59 ntBASIC1.58□□□□□ -2.16
RaraP11416 Mir6962-201ENSMUST00000199512 63 ntBASIC1.58□□□□□ -2.16
RaraP11416 A730009L09Rik-202ENSMUST00000210306 201 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
RaraP11416 Olfr1100-202ENSMUST00000117211 2937 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
RaraP11416 Gm23785-201ENSMUST00000116741 96 ntBASIC1.57□□□□□ -2.16
RaraP11416 Gm25968-201ENSMUST00000157167 100 ntBASIC1.57□□□□□ -2.16
RaraP11416 Gm24549-201ENSMUST00000158647 139 ntBASIC1.57□□□□□ -2.16
RaraP11416 Gm22413-201ENSMUST00000175465 85 ntBASIC1.57□□□□□ -2.16
RaraP11416 Gm22565-201ENSMUST00000175540 69 ntBASIC1.57□□□□□ -2.16
RaraP11416 Mir7079-201ENSMUST00000184697 69 ntBASIC1.57□□□□□ -2.16
RaraP11416 Gm38074-201ENSMUST00000193467 145 ntTSL 5 BASIC1.57□□□□□ -2.16
RaraP11416 Gm24073-201ENSMUST00000158177 106 ntBASIC1.56□□□□□ -2.16
RaraP11416 Traj60-201ENSMUST00000167781 54 ntBASIC1.56□□□□□ -2.16
RaraP11416 AC211878.4-201ENSMUST00000220970 262 ntBASIC1.56□□□□□ -2.16
RaraP11416 Gm24624-201ENSMUST00000082617 164 ntBASIC1.56□□□□□ -2.16
RaraP11416 Mir30a-201ENSMUST00000083471 71 ntBASIC1.56□□□□□ -2.16
RaraP11416 Mir377-201ENSMUST00000083504 68 ntBASIC1.56□□□□□ -2.16
RaraP11416 Gm13723-201ENSMUST00000130722 5036 ntAPPRIS P1 TSL 2 BASIC1.55□□□□□ -2.16
RaraP11416 Gm26485-201ENSMUST00000158019 64 ntBASIC1.55□□□□□ -2.16
RaraP11416 Gm22203-201ENSMUST00000158605 58 ntBASIC1.55□□□□□ -2.16
RaraP11416 Gm22406-201ENSMUST00000174923 93 ntBASIC1.55□□□□□ -2.16
RaraP11416 Gm23726-201ENSMUST00000178937 67 ntBASIC1.55□□□□□ -2.16
RaraP11416 Gm27493-201ENSMUST00000184128 78 ntBASIC1.55□□□□□ -2.16
RaraP11416 Gm22340-201ENSMUST00000157717 114 ntBASIC1.54□□□□□ -2.16
RaraP11416 Gm22100-201ENSMUST00000157926 63 ntBASIC1.54□□□□□ -2.16
RaraP11416 Gm38323-201ENSMUST00000192450 210 ntBASIC1.54□□□□□ -2.16
RaraP11416 Mir500-201ENSMUST00000093600 92 ntBASIC1.54□□□□□ -2.16
RaraP11416 Gm11966-201ENSMUST00000119907 87 ntBASIC1.53□□□□□ -2.16
RaraP11416 Gm24808-201ENSMUST00000157993 118 ntBASIC1.53□□□□□ -2.16
RaraP11416 Gm16399-201ENSMUST00000181423 219 ntBASIC1.53□□□□□ -2.16
RaraP11416 Gm25040-201ENSMUST00000103877 66 ntBASIC1.52□□□□□ -2.17
RaraP11416 Gm25756-201ENSMUST00000103990 136 ntBASIC1.52□□□□□ -2.17
RaraP11416 Gm25416-201ENSMUST00000104221 107 ntBASIC1.52□□□□□ -2.17
RaraP11416 Mir100-201ENSMUST00000175270 80 ntBASIC1.52□□□□□ -2.17
RaraP11416 Mir126a-201ENSMUST00000083606 73 ntBASIC1.52□□□□□ -2.17
RaraP11416 Gm24271-201ENSMUST00000102327 111 ntBASIC1.51□□□□□ -2.17
RaraP11416 Gm24902-201ENSMUST00000158126 123 ntBASIC1.51□□□□□ -2.17
RaraP11416 Mir6342-201ENSMUST00000183870 125 ntBASIC1.51□□□□□ -2.17
RaraP11416 Snhg14-211ENSMUST00000189581 6861 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
RaraP11416 Gm6272-201ENSMUST00000121256 171 ntBASIC1.5□□□□□ -2.17
RaraP11416 Gm23329-201ENSMUST00000157415 108 ntBASIC1.5□□□□□ -2.17
RaraP11416 Snord2-201ENSMUST00000157899 69 ntBASIC1.5□□□□□ -2.17
RaraP11416 Gm23783-201ENSMUST00000157941 102 ntBASIC1.5□□□□□ -2.17
RaraP11416 Arhgap5-204ENSMUST00000219443 9323 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
RaraP11416 Traj45-201ENSMUST00000103697 63 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
RaraP11416 Traj34-201ENSMUST00000103707 58 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
RaraP11416 Gm25759-201ENSMUST00000103988 129 ntBASIC1.49□□□□□ -2.17
RaraP11416 Gm11111-201ENSMUST00000112956 99 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
RaraP11416 Gm24378-201ENSMUST00000122699 106 ntBASIC1.49□□□□□ -2.17
RaraP11416 Mir3064-201ENSMUST00000175532 67 ntBASIC1.49□□□□□ -2.17
RaraP11416 Gm24311-201ENSMUST00000082570 104 ntBASIC1.49□□□□□ -2.17
RaraP11416 Gm11857-201ENSMUST00000119817 324 ntBASIC1.48□□□□□ -2.17
RaraP11416 Gm24500-201ENSMUST00000158447 124 ntBASIC1.48□□□□□ -2.17
RaraP11416 Gm24154-201ENSMUST00000175261 130 ntBASIC1.48□□□□□ -2.17
RaraP11416 Gm24134-201ENSMUST00000083361 71 ntBASIC1.48□□□□□ -2.17
RaraP11416 Gm22048-201ENSMUST00000104721 89 ntBASIC1.47□□□□□ -2.17
RaraP11416 Gm23328-201ENSMUST00000157418 132 ntBASIC1.47□□□□□ -2.17
RaraP11416 Gm23500-201ENSMUST00000157735 98 ntBASIC1.47□□□□□ -2.17
RaraP11416 Mir376b-201ENSMUST00000195930 82 ntBASIC1.47□□□□□ -2.17
RaraP11416 Olfr832-202ENSMUST00000218385 4435 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
RaraP11416 Gm25831-201ENSMUST00000158924 163 ntBASIC1.46□□□□□ -2.18
RaraP11416 Pcdh11x-208ENSMUST00000193899 5394 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
RaraP11416 Tex15-201ENSMUST00000009772 8405 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
RaraP11416 Gm23122-201ENSMUST00000157645 103 ntBASIC1.45□□□□□ -2.18
RaraP11416 Gm23477-201ENSMUST00000158882 128 ntBASIC1.45□□□□□ -2.18
RaraP11416 Mir1954-201ENSMUST00000175595 86 ntBASIC1.45□□□□□ -2.18
RaraP11416 Mir1949-202ENSMUST00000199259 70 ntBASIC1.45□□□□□ -2.18
RaraP11416 Gm10945-201ENSMUST00000105596 60 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
RaraP11416 Gm22233-201ENSMUST00000157464 114 ntBASIC1.44□□□□□ -2.18
RaraP11416 Gm25868-201ENSMUST00000158253 114 ntBASIC1.44□□□□□ -2.18
RaraP11416 Scarna3a-201ENSMUST00000158911 140 ntBASIC1.44□□□□□ -2.18
RaraP11416 Gm27549-201ENSMUST00000183508 62 ntBASIC1.44□□□□□ -2.18
RaraP11416 AC156794.1-201ENSMUST00000214415 214 ntTSL 5 BASIC1.44□□□□□ -2.18
RaraP11416 AC160550.1-201ENSMUST00000228659 181 ntBASIC1.44□□□□□ -2.18
RaraP11416 Mir741-201ENSMUST00000103931 71 ntBASIC1.43□□□□□ -2.18
RaraP11416 Gm23336-201ENSMUST00000117023 123 ntBASIC1.43□□□□□ -2.18
RaraP11416 Gm25328-201ENSMUST00000175013 107 ntBASIC1.43□□□□□ -2.18
RaraP11416 Mir3079-201ENSMUST00000175428 90 ntBASIC1.43□□□□□ -2.18
RaraP11416 Gm21836-201ENSMUST00000178787 63 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
RaraP11416 AC147560.1-201ENSMUST00000197528 107 ntBASIC1.43□□□□□ -2.18
RaraP11416 Gm13065-201ENSMUST00000119178 141 ntBASIC1.42□□□□□ -2.18
RaraP11416 Gm43960-201ENSMUST00000204249 5020 ntBASIC1.41□□□□□ -2.18
RaraP11416 Gm24580-201ENSMUST00000103965 131 ntBASIC1.41□□□□□ -2.18
RaraP11416 Gm23989-201ENSMUST00000117030 66 ntBASIC1.41□□□□□ -2.18
RaraP11416 n-R5s157-201ENSMUST00000122543 121 ntBASIC1.41□□□□□ -2.18
RaraP11416 Gm27717-201ENSMUST00000183933 151 ntBASIC1.41□□□□□ -2.18
RaraP11416 Gm22652-201ENSMUST00000083207 131 ntBASIC1.41□□□□□ -2.18
RaraP11416 Gm23853-201ENSMUST00000158375 104 ntBASIC1.4□□□□□ -2.19
RaraP11416 Mir211-201ENSMUST00000083651 106 ntBASIC1.4□□□□□ -2.19
RaraP11416 Gm13231-201ENSMUST00000119218 2850 ntBASIC1.39□□□□□ -2.19
RaraP11416 Gm5581-201ENSMUST00000072940 2550 ntBASIC1.39□□□□□ -2.19
RaraP11416 Gm24865-201ENSMUST00000103246 96 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 76,532 protein–RNA pairs in 129.9 ms