Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm43977-201ENSMUST00000203970 189 ntBASIC0.8□□□□□ -2.28
ShhQ62226 Gm24410-201ENSMUST00000083433 107 ntBASIC0.8□□□□□ -2.28
ShhQ62226 Gm25497-201ENSMUST00000104425 132 ntBASIC0.79□□□□□ -2.28
ShhQ62226 Gm25375-201ENSMUST00000158157 135 ntBASIC0.79□□□□□ -2.28
ShhQ62226 Gm23065-201ENSMUST00000158236 130 ntBASIC0.79□□□□□ -2.28
ShhQ62226 Gm24678-201ENSMUST00000158756 104 ntBASIC0.79□□□□□ -2.28
ShhQ62226 Gm20386-201ENSMUST00000174010 132 ntBASIC0.79□□□□□ -2.28
ShhQ62226 Mir100-201ENSMUST00000175270 80 ntBASIC0.79□□□□□ -2.28
ShhQ62226 Gm25693-201ENSMUST00000175443 85 ntBASIC0.79□□□□□ -2.28
ShhQ62226 Gm23416-201ENSMUST00000175520 95 ntBASIC0.79□□□□□ -2.28
ShhQ62226 Gm24290-201ENSMUST00000157634 96 ntBASIC0.78□□□□□ -2.28
ShhQ62226 Gm25618-201ENSMUST00000179484 107 ntBASIC0.78□□□□□ -2.28
ShhQ62226 Gm25815-201ENSMUST00000082755 107 ntBASIC0.78□□□□□ -2.28
ShhQ62226 Gm5581-201ENSMUST00000072940 2550 ntBASIC0.77□□□□□ -2.29
ShhQ62226 Gm23482-201ENSMUST00000104172 122 ntBASIC0.77□□□□□ -2.29
ShhQ62226 Gm24234-201ENSMUST00000104316 107 ntBASIC0.77□□□□□ -2.29
ShhQ62226 Gm23900-201ENSMUST00000157569 108 ntBASIC0.77□□□□□ -2.29
ShhQ62226 DQ267101-201ENSMUST00000082562 73 ntBASIC0.77□□□□□ -2.29
ShhQ62226 Gm26456-201ENSMUST00000082831 111 ntBASIC0.77□□□□□ -2.29
ShhQ62226 Gm25987-201ENSMUST00000083234 107 ntBASIC0.77□□□□□ -2.29
ShhQ62226 Gm26062-201ENSMUST00000083379 107 ntBASIC0.77□□□□□ -2.29
ShhQ62226 Gm23661-201ENSMUST00000122630 87 ntBASIC0.76□□□□□ -2.29
ShhQ62226 Gm24399-201ENSMUST00000157869 74 ntBASIC0.76□□□□□ -2.29
ShhQ62226 Mir3109-201ENSMUST00000175301 88 ntBASIC0.76□□□□□ -2.29
ShhQ62226 Gm27297-201ENSMUST00000183395 105 ntBASIC0.76□□□□□ -2.29
ShhQ62226 Gm23344-201ENSMUST00000083818 68 ntBASIC0.76□□□□□ -2.29
ShhQ62226 Gm26338-201ENSMUST00000102372 110 ntBASIC0.75□□□□□ -2.29
ShhQ62226 Gm14884-201ENSMUST00000120456 196 ntBASIC0.75□□□□□ -2.29
ShhQ62226 n-R5s6-201ENSMUST00000122663 88 ntBASIC0.75□□□□□ -2.29
ShhQ62226 Gm26133-201ENSMUST00000157363 100 ntBASIC0.75□□□□□ -2.29
ShhQ62226 Gm24009-201ENSMUST00000157734 93 ntBASIC0.75□□□□□ -2.29
ShhQ62226 Gm25014-201ENSMUST00000158401 103 ntBASIC0.75□□□□□ -2.29
ShhQ62226 Mir3070a-201ENSMUST00000175468 89 ntBASIC0.75□□□□□ -2.29
ShhQ62226 Gm23180-201ENSMUST00000158686 125 ntBASIC0.74□□□□□ -2.29
ShhQ62226 Mir5124a-201ENSMUST00000175528 72 ntBASIC0.74□□□□□ -2.29
ShhQ62226 Mir7010-201ENSMUST00000183464 63 ntBASIC0.74□□□□□ -2.29
ShhQ62226 Gm38113-201ENSMUST00000193704 201 ntBASIC0.74□□□□□ -2.29
ShhQ62226 Mir216b-201ENSMUST00000102363 86 ntBASIC0.73□□□□□ -2.29
ShhQ62226 Gm22689-201ENSMUST00000102452 110 ntBASIC0.73□□□□□ -2.29
ShhQ62226 Mir669f-201ENSMUST00000103850 121 ntBASIC0.73□□□□□ -2.29
ShhQ62226 Gm25040-201ENSMUST00000103877 66 ntBASIC0.73□□□□□ -2.29
ShhQ62226 Gm28435-201ENSMUST00000185496 108 ntBASIC0.73□□□□□ -2.29
ShhQ62226 Gm22004-201ENSMUST00000101884 107 ntBASIC0.72□□□□□ -2.29
ShhQ62226 Gm24467-201ENSMUST00000157887 126 ntBASIC0.72□□□□□ -2.29
ShhQ62226 Gm22520-201ENSMUST00000158269 129 ntBASIC0.72□□□□□ -2.29
ShhQ62226 Gm26285-201ENSMUST00000177923 107 ntBASIC0.72□□□□□ -2.29
ShhQ62226 Mir6342-201ENSMUST00000183870 125 ntBASIC0.72□□□□□ -2.29
ShhQ62226 Gm45197-201ENSMUST00000205288 151 ntBASIC0.72□□□□□ -2.29
ShhQ62226 Gm23622-201ENSMUST00000082460 107 ntBASIC0.72□□□□□ -2.29
ShhQ62226 Gm29535-201ENSMUST00000185723 109 ntBASIC0.71□□□□□ -2.3
ShhQ62226 Gm28143-201ENSMUST00000191082 109 ntBASIC0.71□□□□□ -2.3
ShhQ62226 Gm24208-201ENSMUST00000082783 135 ntBASIC0.71□□□□□ -2.3
ShhQ62226 Mir362-201ENSMUST00000093592 65 ntBASIC0.71□□□□□ -2.3
ShhQ62226 Gm44481-201ENSMUST00000197288 84 ntBASIC0.7□□□□□ -2.3
ShhQ62226 Mir1949-202ENSMUST00000199259 70 ntBASIC0.7□□□□□ -2.3
ShhQ62226 Gm44339-201ENSMUST00000200598 84 ntBASIC0.7□□□□□ -2.3
ShhQ62226 mt-Tv-201ENSMUST00000082389 69 ntBASIC0.7□□□□□ -2.3
ShhQ62226 Snord33-201ENSMUST00000083694 84 ntBASIC0.7□□□□□ -2.3
ShhQ62226 Gm24482-201ENSMUST00000117005 93 ntBASIC0.69□□□□□ -2.3
ShhQ62226 Gm22706-201ENSMUST00000157907 112 ntBASIC0.69□□□□□ -2.3
ShhQ62226 Gm24877-201ENSMUST00000158779 116 ntBASIC0.69□□□□□ -2.3
ShhQ62226 Gm25300-201ENSMUST00000175284 84 ntBASIC0.69□□□□□ -2.3
ShhQ62226 Olfr867-203ENSMUST00000216538 4617 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
ShhQ62226 Gm13723-201ENSMUST00000130722 5036 ntAPPRIS P1 TSL 2 BASIC0.68□□□□□ -2.3
ShhQ62226 Gm26081-201ENSMUST00000104068 132 ntBASIC0.68□□□□□ -2.3
ShhQ62226 Gm25378-201ENSMUST00000104333 129 ntBASIC0.68□□□□□ -2.3
ShhQ62226 Gm23644-201ENSMUST00000157856 77 ntBASIC0.68□□□□□ -2.3
ShhQ62226 Mir6389-201ENSMUST00000183661 102 ntBASIC0.68□□□□□ -2.3
ShhQ62226 Gm38295-201ENSMUST00000191951 151 ntBASIC0.68□□□□□ -2.3
ShhQ62226 Mir376b-201ENSMUST00000195930 82 ntBASIC0.68□□□□□ -2.3
ShhQ62226 Gm25635-201ENSMUST00000082675 131 ntBASIC0.68□□□□□ -2.3
ShhQ62226 Gm25879-201ENSMUST00000104330 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm13065-201ENSMUST00000119178 141 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm23994-201ENSMUST00000158059 88 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm25380-201ENSMUST00000175463 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm24641-201ENSMUST00000178055 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm25484-201ENSMUST00000178217 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm26138-201ENSMUST00000179236 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm22821-201ENSMUST00000179288 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm27289-201ENSMUST00000183341 82 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm27980-201ENSMUST00000184094 169 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Snora75-201ENSMUST00000082903 133 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm23298-201ENSMUST00000083181 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm24614-201ENSMUST00000083269 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm22057-201ENSMUST00000083387 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm25337-201ENSMUST00000083723 104 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm25516-201ENSMUST00000083857 107 ntBASIC0.67□□□□□ -2.3
ShhQ62226 Gm8251-201ENSMUST00000168641 5985 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
ShhQ62226 Gm23203-201ENSMUST00000104374 107 ntBASIC0.66□□□□□ -2.3
ShhQ62226 Gm25056-201ENSMUST00000157372 62 ntBASIC0.66□□□□□ -2.3
ShhQ62226 Gm22213-201ENSMUST00000157564 119 ntBASIC0.66□□□□□ -2.3
ShhQ62226 Gm22788-201ENSMUST00000157876 61 ntBASIC0.66□□□□□ -2.3
ShhQ62226 Gm22212-201ENSMUST00000158096 106 ntBASIC0.66□□□□□ -2.3
ShhQ62226 AC140930.2-201ENSMUST00000221803 109 ntBASIC0.66□□□□□ -2.3
ShhQ62226 Gm45265-201ENSMUST00000210852 2497 ntBASIC0.66□□□□□ -2.3
ShhQ62226 Gm24648-201ENSMUST00000157111 132 ntBASIC0.65□□□□□ -2.31
ShhQ62226 AC166341.8-201ENSMUST00000221267 108 ntBASIC0.65□□□□□ -2.31
ShhQ62226 Gm23735-201ENSMUST00000082551 134 ntBASIC0.65□□□□□ -2.31
ShhQ62226 Gm26109-201ENSMUST00000083970 70 ntBASIC0.65□□□□□ -2.31
ShhQ62226 Gm24233-201ENSMUST00000104317 122 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 76,532 protein–RNA pairs in 128.4 ms