Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Gm23261-201ENSMUST00000158316 136 ntBASIC1,05□□□□□ -2,24
CtcfQ61164 Gm22801-201ENSMUST00000175624 84 ntBASIC1,05□□□□□ -2,24
CtcfQ61164 Gm24801-201ENSMUST00000178503 105 ntBASIC1,05□□□□□ -2,24
CtcfQ61164 Gm25633-201ENSMUST00000178565 107 ntBASIC1,05□□□□□ -2,24
CtcfQ61164 Mir33-201ENSMUST00000083531 69 ntBASIC1,05□□□□□ -2,24
CtcfQ61164 Gm25337-201ENSMUST00000083723 104 ntBASIC1,05□□□□□ -2,24
CtcfQ61164 Gm23321-201ENSMUST00000104465 126 ntBASIC1,04□□□□□ -2,24
CtcfQ61164 Gm25375-201ENSMUST00000158157 135 ntBASIC1,04□□□□□ -2,24
CtcfQ61164 Gm24547-201ENSMUST00000158649 149 ntBASIC1,04□□□□□ -2,24
CtcfQ61164 Mir6237-201ENSMUST00000183808 91 ntBASIC1,04□□□□□ -2,24
CtcfQ61164 Trgj4-201ENSMUST00000184430 61 ntAPPRIS P1 BASIC1,04□□□□□ -2,24
CtcfQ61164 Gm44602-201ENSMUST00000205948 132 ntBASIC1,04□□□□□ -2,24
CtcfQ61164 AC122327.1-201ENSMUST00000220778 108 ntBASIC1,04□□□□□ -2,24
CtcfQ61164 Mir141-201ENSMUST00000083540 72 ntBASIC1,04□□□□□ -2,24
CtcfQ61164 Gm23344-201ENSMUST00000083818 68 ntBASIC1,04□□□□□ -2,24
CtcfQ61164 Arhgap5-204ENSMUST00000219443 9323 ntAPPRIS P1 TSL 5 BASIC1,04□□□□□ -2,24
CtcfQ61164 Gm22544-201ENSMUST00000104349 127 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm11694-201ENSMUST00000118637 159 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm24381-201ENSMUST00000122697 104 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm24399-201ENSMUST00000157869 74 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm22729-201ENSMUST00000158088 129 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm23817-201ENSMUST00000158449 104 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm20386-201ENSMUST00000174010 132 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm25618-201ENSMUST00000179484 107 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm25635-201ENSMUST00000082675 131 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Snord35a-201ENSMUST00000083884 90 ntBASIC1,03□□□□□ -2,24
CtcfQ61164 Gm23482-201ENSMUST00000104172 122 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Gm23130-201ENSMUST00000104252 74 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Gm25110-201ENSMUST00000116684 121 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Gm25775-201ENSMUST00000116716 121 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Gm24795-201ENSMUST00000116737 121 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Gm25171-201ENSMUST00000116926 121 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Gm12469-201ENSMUST00000117623 207 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Gm26425-201ENSMUST00000122529 82 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 AC127302.3-201ENSMUST00000215480 2791 ntBASIC1,02□□□□□ -2,25
CtcfQ61164 Mir709-201ENSMUST00000102190 88 ntBASIC1,01□□□□□ -2,25
CtcfQ61164 Mir669f-201ENSMUST00000103850 121 ntBASIC1,01□□□□□ -2,25
CtcfQ61164 Gm11749-201ENSMUST00000127327 184 ntTSL 2 BASIC1,01□□□□□ -2,25
CtcfQ61164 Gm25014-201ENSMUST00000158401 103 ntBASIC1,01□□□□□ -2,25
CtcfQ61164 Gm23349-201ENSMUST00000158432 98 ntBASIC1,01□□□□□ -2,25
CtcfQ61164 Gm10548-202ENSMUST00000165672 272 ntBASIC1,01□□□□□ -2,25
CtcfQ61164 Mir5619-201ENSMUST00000176065 61 ntBASIC1,01□□□□□ -2,25
CtcfQ61164 CT571266.1-201ENSMUST00000222859 153 ntBASIC1,01□□□□□ -2,25
CtcfQ61164 Gm22354-201ENSMUST00000083919 70 ntBASIC1,01□□□□□ -2,25
CtcfQ61164 Gm45265-201ENSMUST00000210852 2497 ntBASIC1□□□□□ -2,25
CtcfQ61164 Gm14884-201ENSMUST00000120456 196 ntBASIC1□□□□□ -2,25
CtcfQ61164 Gm23900-201ENSMUST00000157569 108 ntBASIC1□□□□□ -2,25
CtcfQ61164 Mir6390-201ENSMUST00000184405 129 ntBASIC1□□□□□ -2,25
CtcfQ61164 Gm36956-201ENSMUST00000193830 214 ntBASIC1□□□□□ -2,25
CtcfQ61164 Gm45197-201ENSMUST00000205288 151 ntBASIC1□□□□□ -2,25
CtcfQ61164 AC153930.1-201ENSMUST00000220016 358 ntTSL 3 BASIC1□□□□□ -2,25
CtcfQ61164 mt-Tn-201ENSMUST00000082399 71 ntBASIC1□□□□□ -2,25
CtcfQ61164 mt-Tc-201ENSMUST00000082400 66 ntBASIC1□□□□□ -2,25
CtcfQ61164 Gm24311-201ENSMUST00000082570 104 ntBASIC1□□□□□ -2,25
CtcfQ61164 Gm22454-201ENSMUST00000082583 107 ntBASIC1□□□□□ -2,25
CtcfQ61164 Gm26062-201ENSMUST00000083379 107 ntBASIC1□□□□□ -2,25
CtcfQ61164 Gm43885-201ENSMUST00000204928 2542 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 Gm13577-201ENSMUST00000121365 205 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 Gm23857-201ENSMUST00000158379 111 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 Mir6380-201ENSMUST00000184334 81 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 Gm44469-201ENSMUST00000198558 79 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 AC160550.1-201ENSMUST00000228659 181 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 Mir27b-201ENSMUST00000083541 73 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 Mir324-201ENSMUST00000083600 89 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 Gm22753-201ENSMUST00000083657 107 ntBASIC0,99□□□□□ -2,25
CtcfQ61164 Gm23994-201ENSMUST00000158059 88 ntBASIC0,98□□□□□ -2,25
CtcfQ61164 Gm24129-201ENSMUST00000158537 97 ntBASIC0,98□□□□□ -2,25
CtcfQ61164 Gm23917-201ENSMUST00000175256 98 ntBASIC0,98□□□□□ -2,25
CtcfQ61164 Snord50a-201ENSMUST00000178154 72 ntBASIC0,98□□□□□ -2,25
CtcfQ61164 Gm24463-201ENSMUST00000178417 72 ntBASIC0,98□□□□□ -2,25
CtcfQ61164 Gm27587-201ENSMUST00000185116 163 ntBASIC0,98□□□□□ -2,25
CtcfQ61164 Gm44488-201ENSMUST00000199467 119 ntBASIC0,98□□□□□ -2,25
CtcfQ61164 Gm26202-201ENSMUST00000082910 65 ntBASIC0,98□□□□□ -2,25
CtcfQ61164 Gm23661-201ENSMUST00000122630 87 ntBASIC0,97□□□□□ -2,25
CtcfQ61164 Gm25968-201ENSMUST00000157167 100 ntBASIC0,97□□□□□ -2,25
CtcfQ61164 Gm26133-201ENSMUST00000157363 100 ntBASIC0,97□□□□□ -2,25
CtcfQ61164 Mir1933-201ENSMUST00000158930 88 ntBASIC0,97□□□□□ -2,25
CtcfQ61164 Gm25449-201ENSMUST00000179389 79 ntBASIC0,97□□□□□ -2,25
CtcfQ61164 Gm44301-201ENSMUST00000200362 143 ntBASIC0,96□□□□□ -2,26
CtcfQ61164 Gm25629-201ENSMUST00000084001 107 ntBASIC0,96□□□□□ -2,26
CtcfQ61164 Gm26051-201ENSMUST00000104642 93 ntBASIC0,95□□□□□ -2,26
CtcfQ61164 B230307C23Rik-201ENSMUST00000113729 192 ntTSL 5 BASIC0,95□□□□□ -2,26
CtcfQ61164 Gm24686-201ENSMUST00000157755 93 ntBASIC0,95□□□□□ -2,26
CtcfQ61164 Gm25600-201ENSMUST00000158357 106 ntBASIC0,95□□□□□ -2,26
CtcfQ61164 Gm25974-201ENSMUST00000158701 94 ntBASIC0,95□□□□□ -2,26
CtcfQ61164 Gm26158-201ENSMUST00000158973 119 ntBASIC0,95□□□□□ -2,26
CtcfQ61164 Gm27974-201ENSMUST00000183415 105 ntBASIC0,95□□□□□ -2,26
CtcfQ61164 Gm43206-201ENSMUST00000197990 114 ntBASIC0,95□□□□□ -2,26
CtcfQ61164 Gm22827-201ENSMUST00000083766 107 ntBASIC0,95□□□□□ -2,26
CtcfQ61164 Gm23369-201ENSMUST00000175406 105 ntBASIC0,94□□□□□ -2,26
CtcfQ61164 Gm27993-201ENSMUST00000184362 85 ntBASIC0,94□□□□□ -2,26
CtcfQ61164 Gm38295-201ENSMUST00000191951 151 ntBASIC0,94□□□□□ -2,26
CtcfQ61164 Mir500-201ENSMUST00000093600 92 ntBASIC0,94□□□□□ -2,26
CtcfQ61164 Snord69-201ENSMUST00000104024 80 ntBASIC0,93□□□□□ -2,26
CtcfQ61164 Gm24009-201ENSMUST00000157734 93 ntBASIC0,93□□□□□ -2,26
CtcfQ61164 Gm24183-201ENSMUST00000122572 93 ntBASIC0,92□□□□□ -2,26
CtcfQ61164 Gm26274-201ENSMUST00000157103 321 ntBASIC0,92□□□□□ -2,26
CtcfQ61164 Mir6389-201ENSMUST00000183661 102 ntBASIC0,92□□□□□ -2,26
CtcfQ61164 Gm38323-201ENSMUST00000192450 210 ntBASIC0,92□□□□□ -2,26
Retrieved 100 of 76,532 protein–RNA pairs in 124,4 ms