Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm22544-201ENSMUST00000104349 127 ntBASIC1.22□□□□□ -2.21
Ddb1Q3U1J4 Gm10974-201ENSMUST00000107486 126 ntAPPRIS P1 TSL 5 BASIC1.22□□□□□ -2.21
Ddb1Q3U1J4 Gm12469-201ENSMUST00000117623 207 ntBASIC1.22□□□□□ -2.21
Ddb1Q3U1J4 Gm38323-201ENSMUST00000192450 210 ntBASIC1.22□□□□□ -2.21
Ddb1Q3U1J4 AC122327.1-201ENSMUST00000220778 108 ntBASIC1.22□□□□□ -2.21
Ddb1Q3U1J4 mt-Tn-201ENSMUST00000082399 71 ntBASIC1.22□□□□□ -2.21
Ddb1Q3U1J4 Gm14884-201ENSMUST00000120456 196 ntBASIC1.21□□□□□ -2.22
Ddb1Q3U1J4 Mir1904-201ENSMUST00000122702 80 ntBASIC1.21□□□□□ -2.22
Ddb1Q3U1J4 Gm23857-201ENSMUST00000158379 111 ntBASIC1.21□□□□□ -2.22
Ddb1Q3U1J4 Gm22454-201ENSMUST00000082583 107 ntBASIC1.21□□□□□ -2.22
Ddb1Q3U1J4 Gm23344-201ENSMUST00000083818 68 ntBASIC1.21□□□□□ -2.22
Ddb1Q3U1J4 Gm26425-201ENSMUST00000122529 82 ntBASIC1.2□□□□□ -2.22
Ddb1Q3U1J4 Gm24920-201ENSMUST00000083018 85 ntBASIC1.2□□□□□ -2.22
Ddb1Q3U1J4 Gm22251-201ENSMUST00000083216 107 ntBASIC1.2□□□□□ -2.22
Ddb1Q3U1J4 Gm23661-201ENSMUST00000122630 87 ntBASIC1.19□□□□□ -2.22
Ddb1Q3U1J4 Gm26466-201ENSMUST00000179615 79 ntBASIC1.19□□□□□ -2.22
Ddb1Q3U1J4 Gm36956-201ENSMUST00000193830 214 ntBASIC1.19□□□□□ -2.22
Ddb1Q3U1J4 Gm43944-201ENSMUST00000205220 120 ntBASIC1.19□□□□□ -2.22
Ddb1Q3U1J4 Gm25022-201ENSMUST00000102205 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Gm23708-201ENSMUST00000104367 123 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Gm22340-201ENSMUST00000157717 114 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Gm24686-201ENSMUST00000157755 93 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir3079-201ENSMUST00000175428 90 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-6-201ENSMUST00000177790 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-3-201ENSMUST00000178082 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Snord50a-201ENSMUST00000178154 72 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Gm24463-201ENSMUST00000178417 72 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-7-201ENSMUST00000178635 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-10-201ENSMUST00000179320 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-5-201ENSMUST00000179352 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Gm25449-201ENSMUST00000179389 79 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-2-201ENSMUST00000179447 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-9-201ENSMUST00000179752 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-4-201ENSMUST00000179923 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Mir467a-8-201ENSMUST00000180070 83 ntBASIC1.18□□□□□ -2.22
Ddb1Q3U1J4 Gm23321-201ENSMUST00000104465 126 ntBASIC1.17□□□□□ -2.22
Ddb1Q3U1J4 Gm11749-201ENSMUST00000127327 184 ntTSL 2 BASIC1.17□□□□□ -2.22
Ddb1Q3U1J4 Gm24777-201ENSMUST00000157644 107 ntBASIC1.17□□□□□ -2.22
Ddb1Q3U1J4 Gm23349-201ENSMUST00000158432 98 ntBASIC1.17□□□□□ -2.22
Ddb1Q3U1J4 Gm25618-201ENSMUST00000179484 107 ntBASIC1.17□□□□□ -2.22
Ddb1Q3U1J4 Gm26712-201ENSMUST00000180813 217 ntBASIC1.17□□□□□ -2.22
Ddb1Q3U1J4 CT571266.1-201ENSMUST00000222859 153 ntBASIC1.17□□□□□ -2.22
Ddb1Q3U1J4 Mir500-201ENSMUST00000093600 92 ntBASIC1.17□□□□□ -2.22
Ddb1Q3U1J4 Gm25056-201ENSMUST00000157372 62 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Gm22431-201ENSMUST00000158545 107 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Gm24637-201ENSMUST00000158674 85 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Gm10548-202ENSMUST00000165672 272 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Gm27993-201ENSMUST00000184362 85 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Gm27587-201ENSMUST00000185116 163 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Gm38295-201ENSMUST00000191951 151 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 AC153930.1-201ENSMUST00000220016 358 ntTSL 3 BASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 mt-Tc-201ENSMUST00000082400 66 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Mir30a-201ENSMUST00000083471 71 ntBASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Olfr1100-202ENSMUST00000117211 2937 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
Ddb1Q3U1J4 Gm25014-201ENSMUST00000158401 103 ntBASIC1.15□□□□□ -2.23
Ddb1Q3U1J4 Gm24500-201ENSMUST00000158447 124 ntBASIC1.15□□□□□ -2.23
Ddb1Q3U1J4 Gm22466-201ENSMUST00000175278 69 ntBASIC1.15□□□□□ -2.23
Ddb1Q3U1J4 Gm27974-201ENSMUST00000183415 105 ntBASIC1.15□□□□□ -2.23
Ddb1Q3U1J4 Gm43206-201ENSMUST00000197990 114 ntBASIC1.15□□□□□ -2.23
Ddb1Q3U1J4 Gm44469-201ENSMUST00000198558 79 ntBASIC1.15□□□□□ -2.23
Ddb1Q3U1J4 Gm24527-201ENSMUST00000082920 107 ntBASIC1.15□□□□□ -2.23
Ddb1Q3U1J4 Snord69-201ENSMUST00000104024 80 ntBASIC1.14□□□□□ -2.23
Ddb1Q3U1J4 Gm22605-201ENSMUST00000158289 108 ntBASIC1.14□□□□□ -2.23
Ddb1Q3U1J4 Gm25600-201ENSMUST00000158357 106 ntBASIC1.14□□□□□ -2.23
Ddb1Q3U1J4 Gm25693-201ENSMUST00000175443 85 ntBASIC1.14□□□□□ -2.23
Ddb1Q3U1J4 Gm24801-201ENSMUST00000178503 105 ntBASIC1.14□□□□□ -2.23
Ddb1Q3U1J4 Zfp654-201ENSMUST00000052588 4741 ntAPPRIS P3 TSL 1 (best) BASIC1.14□□□□□ -2.23
Ddb1Q3U1J4 Gm24020-201ENSMUST00000180156 108 ntBASIC1.13□□□□□ -2.23
Ddb1Q3U1J4 Gm26062-201ENSMUST00000083379 107 ntBASIC1.13□□□□□ -2.23
Ddb1Q3U1J4 Gm22827-201ENSMUST00000083766 107 ntBASIC1.13□□□□□ -2.23
Ddb1Q3U1J4 Gm6272-201ENSMUST00000121256 171 ntBASIC1.12□□□□□ -2.23
Ddb1Q3U1J4 Gm24183-201ENSMUST00000122572 93 ntBASIC1.12□□□□□ -2.23
Ddb1Q3U1J4 Gm24290-201ENSMUST00000157634 96 ntBASIC1.12□□□□□ -2.23
Ddb1Q3U1J4 Gm24549-201ENSMUST00000158647 139 ntBASIC1.12□□□□□ -2.23
Ddb1Q3U1J4 Mir15a-201ENSMUST00000175266 84 ntBASIC1.12□□□□□ -2.23
Ddb1Q3U1J4 Gm24323-201ENSMUST00000175342 77 ntBASIC1.12□□□□□ -2.23
Ddb1Q3U1J4 B230307C23Rik-201ENSMUST00000113729 192 ntTSL 5 BASIC1.11□□□□□ -2.23
Ddb1Q3U1J4 Gm23900-201ENSMUST00000157569 108 ntBASIC1.11□□□□□ -2.23
Ddb1Q3U1J4 Gm24009-201ENSMUST00000157734 93 ntBASIC1.11□□□□□ -2.23
Ddb1Q3U1J4 Gm22140-201ENSMUST00000158745 120 ntBASIC1.11□□□□□ -2.23
Ddb1Q3U1J4 Gm26158-201ENSMUST00000158973 119 ntBASIC1.11□□□□□ -2.23
Ddb1Q3U1J4 Gm25633-201ENSMUST00000178565 107 ntBASIC1.11□□□□□ -2.23
Ddb1Q3U1J4 Gm22805-201ENSMUST00000082739 107 ntBASIC1.11□□□□□ -2.23
Ddb1Q3U1J4 Gm22786-201ENSMUST00000104086 122 ntBASIC1.1□□□□□ -2.23
Ddb1Q3U1J4 Gm24384-201ENSMUST00000122693 75 ntBASIC1.1□□□□□ -2.23
Ddb1Q3U1J4 Gm23468-201ENSMUST00000157125 108 ntBASIC1.1□□□□□ -2.23
Ddb1Q3U1J4 Gm25974-201ENSMUST00000158701 94 ntBASIC1.1□□□□□ -2.23
Ddb1Q3U1J4 Gm25247-201ENSMUST00000175475 90 ntBASIC1.1□□□□□ -2.23
Ddb1Q3U1J4 Gm24431-201ENSMUST00000104073 66 ntBASIC1.09□□□□□ -2.23
Ddb1Q3U1J4 Gm25229-201ENSMUST00000178587 79 ntBASIC1.09□□□□□ -2.23
Ddb1Q3U1J4 AC116319.1-201ENSMUST00000227765 222 ntBASIC1.09□□□□□ -2.23
Ddb1Q3U1J4 Mir33-201ENSMUST00000083531 69 ntBASIC1.09□□□□□ -2.23
Ddb1Q3U1J4 Gm25629-201ENSMUST00000084001 107 ntBASIC1.09□□□□□ -2.23
Ddb1Q3U1J4 Gm24555-201ENSMUST00000104548 124 ntBASIC1.08□□□□□ -2.24
Ddb1Q3U1J4 Gm25112-201ENSMUST00000122680 104 ntBASIC1.08□□□□□ -2.24
Ddb1Q3U1J4 Gm23853-201ENSMUST00000158375 104 ntBASIC1.08□□□□□ -2.24
Ddb1Q3U1J4 Scarna3a-201ENSMUST00000158911 140 ntBASIC1.08□□□□□ -2.24
Ddb1Q3U1J4 Mir3109-201ENSMUST00000175301 88 ntBASIC1.08□□□□□ -2.24
Ddb1Q3U1J4 Mir5619-201ENSMUST00000176065 61 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 76,532 protein–RNA pairs in 157.5 ms