Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm25230-201ENSMUST00000179740 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm26434-201ENSMUST00000179778 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25741-201ENSMUST00000179825 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24759-201ENSMUST00000179827 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24219-201ENSMUST00000179861 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Mir219b-201ENSMUST00000198317 65 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm44488-201ENSMUST00000199467 119 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24148-201ENSMUST00000082762 80 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm23254-201ENSMUST00000097244 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25089-201ENSMUST00000102015 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Mir802-201ENSMUST00000103258 97 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23321-201ENSMUST00000104465 126 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24468-201ENSMUST00000104489 104 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23986-201ENSMUST00000157144 63 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23857-201ENSMUST00000158379 111 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24772-201ENSMUST00000158507 110 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm22431-201ENSMUST00000158545 107 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24549-201ENSMUST00000158647 139 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23917-201ENSMUST00000175256 98 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm25840-201ENSMUST00000177821 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24952-201ENSMUST00000177909 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23682-201ENSMUST00000178146 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24652-201ENSMUST00000178223 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm22629-201ENSMUST00000178272 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24021-201ENSMUST00000178435 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm22274-201ENSMUST00000178441 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm22050-201ENSMUST00000178442 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23688-201ENSMUST00000178502 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23944-201ENSMUST00000178607 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm26283-201ENSMUST00000178625 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm25452-201ENSMUST00000178776 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23286-201ENSMUST00000178963 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm22640-201ENSMUST00000179035 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm25984-201ENSMUST00000179129 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm25585-201ENSMUST00000179469 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm26374-201ENSMUST00000179737 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24040-201ENSMUST00000179786 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm25017-201ENSMUST00000179805 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm23618-201ENSMUST00000179912 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm26284-201ENSMUST00000180107 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24570-201ENSMUST00000180314 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24654-201ENSMUST00000180315 79 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm42844-201ENSMUST00000200355 112 ntBASIC0.89□□□□□ -2.27
ShhQ62226 mt-Tf-201ENSMUST00000082387 68 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Mir7-1-201ENSMUST00000083500 108 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm25683-201ENSMUST00000083940 131 ntBASIC0.89□□□□□ -2.27
ShhQ62226 Gm24129-201ENSMUST00000158537 97 ntBASIC0.88□□□□□ -2.27
ShhQ62226 Gm26158-201ENSMUST00000158973 119 ntBASIC0.88□□□□□ -2.27
ShhQ62226 Olfr865-ps1-201ENSMUST00000212071 85 ntBASIC0.88□□□□□ -2.27
ShhQ62226 Gm25684-201ENSMUST00000083941 107 ntBASIC0.88□□□□□ -2.27
ShhQ62226 Gm25629-201ENSMUST00000084001 107 ntBASIC0.88□□□□□ -2.27
ShhQ62226 Gm43885-201ENSMUST00000204928 2542 ntBASIC0.88□□□□□ -2.27
ShhQ62226 Gm24431-201ENSMUST00000104073 66 ntBASIC0.87□□□□□ -2.27
ShhQ62226 Gm22786-201ENSMUST00000104086 122 ntBASIC0.87□□□□□ -2.27
ShhQ62226 Gm23853-201ENSMUST00000158375 104 ntBASIC0.87□□□□□ -2.27
ShhQ62226 Gm23384-201ENSMUST00000158593 103 ntBASIC0.87□□□□□ -2.27
ShhQ62226 Gm22070-201ENSMUST00000178475 107 ntBASIC0.87□□□□□ -2.27
ShhQ62226 Gm27607-201ENSMUST00000185162 122 ntBASIC0.87□□□□□ -2.27
ShhQ62226 AC116319.1-201ENSMUST00000227765 222 ntBASIC0.87□□□□□ -2.27
ShhQ62226 Snord32a-201ENSMUST00000083285 83 ntBASIC0.87□□□□□ -2.27
ShhQ62226 Gm25887-201ENSMUST00000157777 84 ntBASIC0.86□□□□□ -2.27
ShhQ62226 Gm24500-201ENSMUST00000158447 124 ntBASIC0.86□□□□□ -2.27
ShhQ62226 Gm26202-201ENSMUST00000082910 65 ntBASIC0.86□□□□□ -2.27
ShhQ62226 Mir1a-1-201ENSMUST00000093635 77 ntBASIC0.86□□□□□ -2.27
ShhQ62226 Gm6985-201ENSMUST00000121255 271 ntBASIC0.85□□□□□ -2.27
ShhQ62226 Traj49-202ENSMUST00000199452 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
ShhQ62226 AC211878.4-201ENSMUST00000220970 262 ntBASIC0.85□□□□□ -2.27
ShhQ62226 Gm25899-201ENSMUST00000082672 141 ntBASIC0.85□□□□□ -2.27
ShhQ62226 Gm23301-201ENSMUST00000082713 65 ntBASIC0.85□□□□□ -2.27
ShhQ62226 Snord80-201ENSMUST00000083801 81 ntBASIC0.85□□□□□ -2.27
ShhQ62226 Snord35a-201ENSMUST00000083884 90 ntBASIC0.85□□□□□ -2.27
ShhQ62226 Gm22319-201ENSMUST00000157147 122 ntBASIC0.84□□□□□ -2.27
ShhQ62226 Gm22490-201ENSMUST00000157188 119 ntBASIC0.84□□□□□ -2.27
ShhQ62226 Gm25889-201ENSMUST00000157775 107 ntBASIC0.84□□□□□ -2.27
ShhQ62226 Gm26369-201ENSMUST00000157825 100 ntBASIC0.84□□□□□ -2.27
ShhQ62226 Gm25600-201ENSMUST00000158357 106 ntBASIC0.84□□□□□ -2.27
ShhQ62226 Scarna3a-201ENSMUST00000158911 140 ntBASIC0.84□□□□□ -2.27
ShhQ62226 Mir764-201ENSMUST00000103259 108 ntBASIC0.83□□□□□ -2.28
ShhQ62226 B230307C23Rik-201ENSMUST00000113729 192 ntTSL 5 BASIC0.83□□□□□ -2.28
ShhQ62226 Gm11694-201ENSMUST00000118637 159 ntBASIC0.83□□□□□ -2.28
ShhQ62226 Mir6380-201ENSMUST00000184334 81 ntBASIC0.83□□□□□ -2.28
ShhQ62226 Gm25138-201ENSMUST00000083248 136 ntBASIC0.83□□□□□ -2.28
ShhQ62226 Mir377-201ENSMUST00000083504 68 ntBASIC0.83□□□□□ -2.28
ShhQ62226 Mir101a-201ENSMUST00000083517 83 ntBASIC0.83□□□□□ -2.28
ShhQ62226 Zfp654-201ENSMUST00000052588 4741 ntAPPRIS P3 TSL 1 (best) BASIC0.83□□□□□ -2.28
ShhQ62226 Gm22030-201ENSMUST00000116942 63 ntBASIC0.82□□□□□ -2.28
ShhQ62226 Gm23989-201ENSMUST00000117030 66 ntBASIC0.82□□□□□ -2.28
ShhQ62226 Gm25974-201ENSMUST00000158701 94 ntBASIC0.82□□□□□ -2.28
ShhQ62226 Gm25633-201ENSMUST00000178565 107 ntBASIC0.82□□□□□ -2.28
ShhQ62226 Gm44301-201ENSMUST00000200362 143 ntBASIC0.82□□□□□ -2.28
ShhQ62226 Gm44602-201ENSMUST00000205948 132 ntBASIC0.82□□□□□ -2.28
ShhQ62226 Mir695-201ENSMUST00000102261 109 ntBASIC0.81□□□□□ -2.28
ShhQ62226 Gm22544-201ENSMUST00000104349 127 ntBASIC0.81□□□□□ -2.28
ShhQ62226 Gm25370-201ENSMUST00000158159 94 ntBASIC0.81□□□□□ -2.28
ShhQ62226 Gm27587-201ENSMUST00000185116 163 ntBASIC0.81□□□□□ -2.28
ShhQ62226 Gm44211-201ENSMUST00000204867 145 ntBASIC0.81□□□□□ -2.28
ShhQ62226 Gm24524-201ENSMUST00000082925 170 ntBASIC0.81□□□□□ -2.28
ShhQ62226 Gm22541-201ENSMUST00000158165 127 ntBASIC0.8□□□□□ -2.28
ShhQ62226 Gm22503-201ENSMUST00000158983 115 ntBASIC0.8□□□□□ -2.28
ShhQ62226 Gm24323-201ENSMUST00000175342 77 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 76,532 protein–RNA pairs in 82.8 ms