Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Gm24099-201ENSMUST00000083384 107 ntBASIC1,16□□□□□ -2,22
CtcfQ61164 Olfr1154-203ENSMUST00000215862 2624 ntAPPRIS P1 TSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm24777-201ENSMUST00000157644 107 ntBASIC1,15□□□□□ -2,23
CtcfQ61164 Gm26358-201ENSMUST00000158215 97 ntBASIC1,15□□□□□ -2,23
CtcfQ61164 Mir7663-201ENSMUST00000183950 61 ntBASIC1,15□□□□□ -2,23
CtcfQ61164 Gm28398-201ENSMUST00000186587 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm29653-201ENSMUST00000187192 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm20118-201ENSMUST00000187207 162 ntBASIC1,15□□□□□ -2,23
CtcfQ61164 Gm28810-201ENSMUST00000188173 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm28575-201ENSMUST00000188234 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm28132-201ENSMUST00000189901 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm29580-201ENSMUST00000189921 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm28858-201ENSMUST00000190517 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm28210-201ENSMUST00000190631 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm28336-201ENSMUST00000190743 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Gm29042-201ENSMUST00000191564 166 ntTSL 5 BASIC1,15□□□□□ -2,23
CtcfQ61164 Mir468-201ENSMUST00000197332 78 ntBASIC1,15□□□□□ -2,23
CtcfQ61164 Gm44560-201ENSMUST00000207816 3115 ntBASIC1,14□□□□□ -2,23
CtcfQ61164 Gm24431-201ENSMUST00000104073 66 ntBASIC1,14□□□□□ -2,23
CtcfQ61164 Gm26369-201ENSMUST00000157825 100 ntBASIC1,14□□□□□ -2,23
CtcfQ61164 Gm22212-201ENSMUST00000158096 106 ntBASIC1,14□□□□□ -2,23
CtcfQ61164 Gm22770-201ENSMUST00000158368 67 ntBASIC1,14□□□□□ -2,23
CtcfQ61164 Gm26398-201ENSMUST00000179015 127 ntBASIC1,14□□□□□ -2,23
CtcfQ61164 Mir30c-2-201ENSMUST00000083633 84 ntBASIC1,14□□□□□ -2,23
CtcfQ61164 Gm14400-201ENSMUST00000117234 2135 ntBASIC1,13□□□□□ -2,23
CtcfQ61164 Gm10974-201ENSMUST00000107486 126 ntAPPRIS P1 TSL 5 BASIC1,13□□□□□ -2,23
CtcfQ61164 Gm23114-201ENSMUST00000158478 117 ntBASIC1,13□□□□□ -2,23
CtcfQ61164 Gm26290-201ENSMUST00000158891 145 ntBASIC1,13□□□□□ -2,23
CtcfQ61164 Mir3083-201ENSMUST00000175377 64 ntBASIC1,13□□□□□ -2,23
CtcfQ61164 Gm42891-201ENSMUST00000199340 281 ntTSL 5 BASIC1,13□□□□□ -2,23
CtcfQ61164 Mir764-201ENSMUST00000103259 108 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Traj13-201ENSMUST00000103728 57 ntAPPRIS P1 BASIC1,12□□□□□ -2,23
CtcfQ61164 Mir1899-201ENSMUST00000122798 96 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Gm24728-201ENSMUST00000158226 125 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Gm24221-201ENSMUST00000158833 313 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Gm22503-201ENSMUST00000158983 115 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Gm17172-201ENSMUST00000171782 190 ntTSL 3 BASIC1,12□□□□□ -2,23
CtcfQ61164 Vmn1r-ps69-201ENSMUST00000172759 201 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Gm28767-201ENSMUST00000188601 114 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Gm38274-201ENSMUST00000195689 148 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Traj49-202ENSMUST00000199452 62 ntAPPRIS P1 BASIC1,12□□□□□ -2,23
CtcfQ61164 Gm44948-201ENSMUST00000209050 149 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 CT030166.3-201ENSMUST00000223203 193 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Gm22950-201ENSMUST00000082776 107 ntBASIC1,12□□□□□ -2,23
CtcfQ61164 Gm22706-201ENSMUST00000157907 112 ntBASIC1,11□□□□□ -2,23
CtcfQ61164 Gm25715-201ENSMUST00000158627 125 ntBASIC1,11□□□□□ -2,23
CtcfQ61164 Gm24223-201ENSMUST00000158827 90 ntBASIC1,11□□□□□ -2,23
CtcfQ61164 Mir5124a-201ENSMUST00000175528 72 ntBASIC1,11□□□□□ -2,23
CtcfQ61164 Gm25851-201ENSMUST00000082794 107 ntBASIC1,11□□□□□ -2,23
CtcfQ61164 Gm23790-201ENSMUST00000083013 107 ntBASIC1,11□□□□□ -2,23
CtcfQ61164 Gm23652-201ENSMUST00000116752 107 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 Gm25289-201ENSMUST00000122799 119 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 Gm24467-201ENSMUST00000157887 126 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 Gm22515-201ENSMUST00000158273 305 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 Gm23180-201ENSMUST00000158686 125 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 Gm29535-201ENSMUST00000185723 109 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 Gm28143-201ENSMUST00000191082 109 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 Mir219b-201ENSMUST00000198317 65 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 AC211878.4-201ENSMUST00000220970 262 ntBASIC1,1□□□□□ -2,23
CtcfQ61164 Gm25022-201ENSMUST00000102205 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir1191-201ENSMUST00000116883 120 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 n-R5s70-201ENSMUST00000122650 116 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Gm24401-201ENSMUST00000157868 91 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Gm25901-201ENSMUST00000158494 130 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-6-201ENSMUST00000177790 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-3-201ENSMUST00000178082 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-7-201ENSMUST00000178635 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-10-201ENSMUST00000179320 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-5-201ENSMUST00000179352 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-2-201ENSMUST00000179447 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-9-201ENSMUST00000179752 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-4-201ENSMUST00000179923 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Mir467a-8-201ENSMUST00000180070 83 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Gm37998-201ENSMUST00000195699 166 ntTSL 5 BASIC1,09□□□□□ -2,23
CtcfQ61164 AC140930.2-201ENSMUST00000221803 109 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 AC159093.2-201ENSMUST00000227881 297 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Gm22251-201ENSMUST00000083216 107 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Gm26109-201ENSMUST00000083970 70 ntBASIC1,09□□□□□ -2,23
CtcfQ61164 Olfr1100-202ENSMUST00000117211 2937 ntAPPRIS P1 TSL 5 BASIC1,08□□□□□ -2,24
CtcfQ61164 Gm24942-201ENSMUST00000158328 114 ntBASIC1,08□□□□□ -2,24
CtcfQ61164 Gm22431-201ENSMUST00000158545 107 ntBASIC1,08□□□□□ -2,24
CtcfQ61164 Mir6904-201ENSMUST00000183443 67 ntBASIC1,08□□□□□ -2,24
CtcfQ61164 Gm44396-201ENSMUST00000199843 114 ntBASIC1,08□□□□□ -2,24
CtcfQ61164 Snord60-201ENSMUST00000082834 78 ntBASIC1,08□□□□□ -2,24
CtcfQ61164 Gm26207-201ENSMUST00000082909 104 ntBASIC1,08□□□□□ -2,24
CtcfQ61164 Snhg14-211ENSMUST00000189581 6861 ntTSL 1 (best) BASIC1,07□□□□□ -2,24
CtcfQ61164 Gm25506-201ENSMUST00000104339 70 ntBASIC1,07□□□□□ -2,24
CtcfQ61164 Gm23881-201ENSMUST00000116872 66 ntBASIC1,07□□□□□ -2,24
CtcfQ61164 Gm26104-201ENSMUST00000157250 108 ntBASIC1,07□□□□□ -2,24
CtcfQ61164 Mir1961-201ENSMUST00000158643 112 ntBASIC1,07□□□□□ -2,24
CtcfQ61164 Gm26466-201ENSMUST00000179615 79 ntBASIC1,07□□□□□ -2,24
CtcfQ61164 CT025630.1-201ENSMUST00000227901 172 ntBASIC1,07□□□□□ -2,24
CtcfQ61164 AC132833.2-201ENSMUST00000228699 157 ntBASIC1,07□□□□□ -2,24
CtcfQ61164 Gm23038-201ENSMUST00000083873 104 ntBASIC1,07□□□□□ -2,24
CtcfQ61164 Gm23893-201ENSMUST00000158106 134 ntBASIC1,06□□□□□ -2,24
CtcfQ61164 Gm23008-201ENSMUST00000158946 80 ntBASIC1,06□□□□□ -2,24
CtcfQ61164 Gm24252-201ENSMUST00000083700 132 ntBASIC1,06□□□□□ -2,24
CtcfQ61164 Gm25683-201ENSMUST00000083940 131 ntBASIC1,06□□□□□ -2,24
CtcfQ61164 Gm22672-201ENSMUST00000104414 134 ntBASIC1,05□□□□□ -2,24
CtcfQ61164 Gm24476-201ENSMUST00000157437 131 ntBASIC1,05□□□□□ -2,24
Retrieved 100 of 76,532 protein–RNA pairs in 134,4 ms