Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mir223-201ENSMUST00000102112 110 ntBASIC2.28□□□□□ -2.04
Rnf40Q3U319 Gm24937-201ENSMUST00000122597 134 ntBASIC2.28□□□□□ -2.04
Rnf40Q3U319 Snord14a-201ENSMUST00000082807 87 ntBASIC2.28□□□□□ -2.04
Rnf40Q3U319 Olfr1291-ps1-201ENSMUST00000121345 5403 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
Rnf40Q3U319 Gm24580-201ENSMUST00000103965 131 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm25110-201ENSMUST00000116684 121 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm25775-201ENSMUST00000116716 121 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm24795-201ENSMUST00000116737 121 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm23551-201ENSMUST00000116852 121 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm25171-201ENSMUST00000116926 121 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm24075-201ENSMUST00000158175 72 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm25035-201ENSMUST00000175414 77 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm22862-201ENSMUST00000178593 121 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Mir7675-201ENSMUST00000184262 58 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm44526-201ENSMUST00000204664 121 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 AC116319.1-201ENSMUST00000227765 222 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Gm22622-201ENSMUST00000082870 129 ntBASIC2.27□□□□□ -2.05
Rnf40Q3U319 Mir487b-201ENSMUST00000102265 82 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm22494-201ENSMUST00000104495 128 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Mir876-201ENSMUST00000104659 81 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm23469-201ENSMUST00000157131 104 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm25423-201ENSMUST00000157609 107 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm25465-201ENSMUST00000157716 105 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm23500-201ENSMUST00000157735 98 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Trav5n-3-201ENSMUST00000164511 270 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm25693-201ENSMUST00000175443 85 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm27993-201ENSMUST00000184362 85 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm44488-201ENSMUST00000199467 119 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Gm25650-201ENSMUST00000083784 162 ntBASIC2.26□□□□□ -2.05
Rnf40Q3U319 Fam46d-201ENSMUST00000101292 2995 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
Rnf40Q3U319 Trdj2-201ENSMUST00000103683 59 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
Rnf40Q3U319 Traj53-201ENSMUST00000103690 66 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
Rnf40Q3U319 Gm24290-201ENSMUST00000157634 96 ntBASIC2.25□□□□□ -2.05
Rnf40Q3U319 Mir7068-201ENSMUST00000183439 74 ntBASIC2.25□□□□□ -2.05
Rnf40Q3U319 Mir8090-201ENSMUST00000185078 136 ntBASIC2.25□□□□□ -2.05
Rnf40Q3U319 Gm20083-201ENSMUST00000205849 751 ntTSL 3 BASIC2.25□□□□□ -2.05
Rnf40Q3U319 Mir30d-201ENSMUST00000083503 82 ntBASIC2.25□□□□□ -2.05
Rnf40Q3U319 Olfr1218-202ENSMUST00000213609 3760 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
Rnf40Q3U319 Olfr1013-202ENSMUST00000216397 4925 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
Rnf40Q3U319 Gm24922-201ENSMUST00000158511 102 ntBASIC2.24□□□□□ -2.05
Rnf40Q3U319 Gm22929-201ENSMUST00000175517 107 ntBASIC2.24□□□□□ -2.05
Rnf40Q3U319 Gm25648-201ENSMUST00000177844 79 ntBASIC2.24□□□□□ -2.05
Rnf40Q3U319 Gm18433-201ENSMUST00000192747 197 ntBASIC2.24□□□□□ -2.05
Rnf40Q3U319 n-R5s176-201ENSMUST00000082683 109 ntBASIC2.24□□□□□ -2.05
Rnf40Q3U319 Snord1a-201ENSMUST00000083160 74 ntBASIC2.24□□□□□ -2.05
Rnf40Q3U319 Ppp1r3a-201ENSMUST00000045096 6965 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
Rnf40Q3U319 Gm25759-201ENSMUST00000103988 129 ntBASIC2.23□□□□□ -2.05
Rnf40Q3U319 Gm26015-201ENSMUST00000104402 125 ntBASIC2.23□□□□□ -2.05
Rnf40Q3U319 Gm25529-201ENSMUST00000104850 92 ntBASIC2.23□□□□□ -2.05
Rnf40Q3U319 Gm22100-201ENSMUST00000157926 63 ntBASIC2.23□□□□□ -2.05
Rnf40Q3U319 Gm25460-201ENSMUST00000157954 127 ntBASIC2.23□□□□□ -2.05
Rnf40Q3U319 Gm27554-201ENSMUST00000185074 98 ntBASIC2.23□□□□□ -2.05
Rnf40Q3U319 Gm23377-201ENSMUST00000082943 126 ntBASIC2.23□□□□□ -2.05
Rnf40Q3U319 Olfr307-203ENSMUST00000217494 4515 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
Rnf40Q3U319 Gm7173-205ENSMUST00000197180 9412 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
Rnf40Q3U319 Mir682-201ENSMUST00000102281 96 ntBASIC2.22□□□□□ -2.05
Rnf40Q3U319 Gm22786-201ENSMUST00000104086 122 ntBASIC2.22□□□□□ -2.05
Rnf40Q3U319 Gm22093-201ENSMUST00000158980 111 ntBASIC2.22□□□□□ -2.05
Rnf40Q3U319 Gm25328-201ENSMUST00000175013 107 ntBASIC2.22□□□□□ -2.05
Rnf40Q3U319 Gm23813-201ENSMUST00000175153 77 ntBASIC2.22□□□□□ -2.05
Rnf40Q3U319 Gm25402-201ENSMUST00000082966 131 ntBASIC2.22□□□□□ -2.05
Rnf40Q3U319 Olfr1029-202ENSMUST00000217244 3743 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
Rnf40Q3U319 Gm25524-201ENSMUST00000101821 107 ntBASIC2.21□□□□□ -2.06
Rnf40Q3U319 Gm22752-201ENSMUST00000102083 109 ntBASIC2.21□□□□□ -2.06
Rnf40Q3U319 Mir466k-201ENSMUST00000116774 122 ntBASIC2.21□□□□□ -2.06
Rnf40Q3U319 Gm25642-201ENSMUST00000175137 66 ntBASIC2.21□□□□□ -2.06
Rnf40Q3U319 Mir3108-201ENSMUST00000175500 79 ntBASIC2.21□□□□□ -2.06
Rnf40Q3U319 Gm22087-201ENSMUST00000158339 88 ntBASIC2.2□□□□□ -2.06
Rnf40Q3U319 Mir1961-201ENSMUST00000158643 112 ntBASIC2.2□□□□□ -2.06
Rnf40Q3U319 Mir3075-201ENSMUST00000175340 85 ntBASIC2.2□□□□□ -2.06
Rnf40Q3U319 Mir5118-201ENSMUST00000175551 67 ntBASIC2.2□□□□□ -2.06
Rnf40Q3U319 Gm45654-201ENSMUST00000210980 123 ntBASIC2.2□□□□□ -2.06
Rnf40Q3U319 Gm45655-201ENSMUST00000211625 160 ntBASIC2.2□□□□□ -2.06
Rnf40Q3U319 Gm11060-201ENSMUST00000111107 72 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
Rnf40Q3U319 Gm24237-201ENSMUST00000157790 132 ntBASIC2.19□□□□□ -2.06
Rnf40Q3U319 Gm24770-201ENSMUST00000158505 92 ntBASIC2.19□□□□□ -2.06
Rnf40Q3U319 Gm24229-201ENSMUST00000158830 118 ntBASIC2.19□□□□□ -2.06
Rnf40Q3U319 Mir7013-201ENSMUST00000183540 72 ntBASIC2.19□□□□□ -2.06
Rnf40Q3U319 Gm27977-201ENSMUST00000185159 111 ntBASIC2.19□□□□□ -2.06
Rnf40Q3U319 Snord2-201ENSMUST00000157899 69 ntBASIC2.18□□□□□ -2.06
Rnf40Q3U319 Gm22517-201ENSMUST00000158265 136 ntBASIC2.18□□□□□ -2.06
Rnf40Q3U319 Gm23005-201ENSMUST00000158950 136 ntBASIC2.18□□□□□ -2.06
Rnf40Q3U319 Gm26342-201ENSMUST00000104557 129 ntBASIC2.17□□□□□ -2.06
Rnf40Q3U319 Gm23991-201ENSMUST00000117033 93 ntBASIC2.17□□□□□ -2.06
Rnf40Q3U319 Gm24073-201ENSMUST00000158177 106 ntBASIC2.17□□□□□ -2.06
Rnf40Q3U319 Gm22401-201ENSMUST00000174927 117 ntBASIC2.17□□□□□ -2.06
Rnf40Q3U319 Gm25820-202ENSMUST00000197479 128 ntBASIC2.17□□□□□ -2.06
Rnf40Q3U319 AC125488.1-201ENSMUST00000219586 212 ntBASIC2.17□□□□□ -2.06
Rnf40Q3U319 Gm24612-201ENSMUST00000083267 107 ntBASIC2.17□□□□□ -2.06
Rnf40Q3U319 Mir709-201ENSMUST00000102190 88 ntBASIC2.16□□□□□ -2.06
Rnf40Q3U319 Gm15536-201ENSMUST00000121411 114 ntBASIC2.16□□□□□ -2.06
Rnf40Q3U319 Gm22803-201ENSMUST00000158049 283 ntBASIC2.16□□□□□ -2.06
Rnf40Q3U319 Gm23339-201ENSMUST00000158962 139 ntBASIC2.16□□□□□ -2.06
Rnf40Q3U319 Gm21905-201ENSMUST00000177616 87 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
Rnf40Q3U319 Gm24624-201ENSMUST00000082617 164 ntBASIC2.16□□□□□ -2.06
Rnf40Q3U319 Gm23730-201ENSMUST00000083236 107 ntBASIC2.16□□□□□ -2.06
Rnf40Q3U319 Mir127-201ENSMUST00000093568 70 ntBASIC2.16□□□□□ -2.06
Rnf40Q3U319 Gm24984-201ENSMUST00000104454 133 ntBASIC2.15□□□□□ -2.07
Rnf40Q3U319 Gm23336-201ENSMUST00000117023 123 ntBASIC2.15□□□□□ -2.07
Rnf40Q3U319 Gm25866-201ENSMUST00000158245 112 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 76,532 protein–RNA pairs in 183.8 ms