Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24777-201ENSMUST00000157644 107 ntBASIC0.99□□□□□ -2.25
ShhQ62226 Gm24221-201ENSMUST00000158833 313 ntBASIC0.99□□□□□ -2.25
ShhQ62226 Gm25646-201ENSMUST00000178527 79 ntBASIC0.99□□□□□ -2.25
ShhQ62226 Gm26398-201ENSMUST00000179015 127 ntBASIC0.99□□□□□ -2.25
ShhQ62226 Mir6381-201ENSMUST00000183426 87 ntBASIC0.99□□□□□ -2.25
ShhQ62226 Gm27419-201ENSMUST00000184576 109 ntBASIC0.99□□□□□ -2.25
ShhQ62226 Fam46d-201ENSMUST00000101292 2995 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
ShhQ62226 Gm26421-201ENSMUST00000104279 132 ntBASIC0.98□□□□□ -2.25
ShhQ62226 Gm24555-201ENSMUST00000104548 124 ntBASIC0.98□□□□□ -2.25
ShhQ62226 Gm25753-201ENSMUST00000116792 121 ntBASIC0.98□□□□□ -2.25
ShhQ62226 Gm23881-201ENSMUST00000116872 66 ntBASIC0.98□□□□□ -2.25
ShhQ62226 Gm22638-201ENSMUST00000179674 107 ntBASIC0.98□□□□□ -2.25
ShhQ62226 AC159093.2-201ENSMUST00000227881 297 ntBASIC0.98□□□□□ -2.25
ShhQ62226 Gm24586-201ENSMUST00000116695 89 ntBASIC0.97□□□□□ -2.25
ShhQ62226 Mir1191-201ENSMUST00000116883 120 ntBASIC0.97□□□□□ -2.25
ShhQ62226 Gm36956-201ENSMUST00000193830 214 ntBASIC0.97□□□□□ -2.25
ShhQ62226 Gm37796-201ENSMUST00000195327 134 ntBASIC0.97□□□□□ -2.25
ShhQ62226 Gm23507-201ENSMUST00000083078 107 ntBASIC0.97□□□□□ -2.25
ShhQ62226 Mir500-201ENSMUST00000093600 92 ntBASIC0.97□□□□□ -2.25
ShhQ62226 Snord69-201ENSMUST00000104024 80 ntBASIC0.96□□□□□ -2.26
ShhQ62226 Gm25680-201ENSMUST00000116917 126 ntBASIC0.96□□□□□ -2.26
ShhQ62226 Gm22635-201ENSMUST00000116962 126 ntBASIC0.96□□□□□ -2.26
ShhQ62226 Gm12086-201ENSMUST00000120863 228 ntBASIC0.96□□□□□ -2.26
ShhQ62226 Gm24223-201ENSMUST00000158827 90 ntBASIC0.96□□□□□ -2.26
ShhQ62226 Gm24527-201ENSMUST00000082920 107 ntBASIC0.96□□□□□ -2.26
ShhQ62226 Mir22-201ENSMUST00000083595 95 ntBASIC0.96□□□□□ -2.26
ShhQ62226 Gm22828-201ENSMUST00000083768 107 ntBASIC0.96□□□□□ -2.26
ShhQ62226 Gm44560-201ENSMUST00000207816 3115 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Sycp1-ps1-201ENSMUST00000207882 2768 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Snord78-201ENSMUST00000104032 66 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Gm23601-201ENSMUST00000157259 131 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Gm25978-201ENSMUST00000158698 90 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Gm28270-201ENSMUST00000188550 109 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Gm28328-201ENSMUST00000188869 109 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Gm45429-201ENSMUST00000209527 172 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Mir369-201ENSMUST00000083627 79 ntBASIC0.95□□□□□ -2.26
ShhQ62226 Gm10974-201ENSMUST00000107486 126 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
ShhQ62226 Gm22089-201ENSMUST00000158336 102 ntBASIC0.94□□□□□ -2.26
ShhQ62226 Gm10548-202ENSMUST00000165672 272 ntBASIC0.94□□□□□ -2.26
ShhQ62226 Gm22509-201ENSMUST00000082775 107 ntBASIC0.94□□□□□ -2.26
ShhQ62226 Gm24920-201ENSMUST00000083018 85 ntBASIC0.94□□□□□ -2.26
ShhQ62226 Gm22055-201ENSMUST00000083388 107 ntBASIC0.94□□□□□ -2.26
ShhQ62226 Gm22753-201ENSMUST00000083657 107 ntBASIC0.94□□□□□ -2.26
ShhQ62226 Gm26290-201ENSMUST00000158891 145 ntBASIC0.93□□□□□ -2.26
ShhQ62226 Mir3079-201ENSMUST00000175428 90 ntBASIC0.93□□□□□ -2.26
ShhQ62226 Gm25247-201ENSMUST00000175475 90 ntBASIC0.93□□□□□ -2.26
ShhQ62226 Gm27993-201ENSMUST00000184362 85 ntBASIC0.93□□□□□ -2.26
ShhQ62226 Gm44469-201ENSMUST00000198558 79 ntBASIC0.93□□□□□ -2.26
ShhQ62226 Olfr1100-202ENSMUST00000117211 2937 ntAPPRIS P1 TSL 5 BASIC0.92□□□□□ -2.26
ShhQ62226 Gm12469-201ENSMUST00000117623 207 ntBASIC0.92□□□□□ -2.26
ShhQ62226 Gm22466-201ENSMUST00000175278 69 ntBASIC0.92□□□□□ -2.26
ShhQ62226 Gm24020-201ENSMUST00000180156 108 ntBASIC0.92□□□□□ -2.26
ShhQ62226 Gm38274-201ENSMUST00000195689 148 ntBASIC0.92□□□□□ -2.26
ShhQ62226 Gm26054-201ENSMUST00000083037 107 ntBASIC0.92□□□□□ -2.26
ShhQ62226 Mir33-201ENSMUST00000083531 69 ntBASIC0.92□□□□□ -2.26
ShhQ62226 Gm24492-201ENSMUST00000083798 107 ntBASIC0.92□□□□□ -2.26
ShhQ62226 Mir466-201ENSMUST00000093591 73 ntBASIC0.92□□□□□ -2.26
ShhQ62226 Gm22031-201ENSMUST00000116945 126 ntBASIC0.91□□□□□ -2.26
ShhQ62226 Mir15a-201ENSMUST00000175266 84 ntBASIC0.91□□□□□ -2.26
ShhQ62226 Gm27974-201ENSMUST00000183415 105 ntBASIC0.91□□□□□ -2.26
ShhQ62226 Gm43324-201ENSMUST00000197482 289 ntBASIC0.91□□□□□ -2.26
ShhQ62226 Gm43944-201ENSMUST00000205220 120 ntBASIC0.91□□□□□ -2.26
ShhQ62226 Mir30a-201ENSMUST00000083471 71 ntBASIC0.91□□□□□ -2.26
ShhQ62226 Gm6272-201ENSMUST00000121256 171 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm13577-201ENSMUST00000121365 205 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24947-201ENSMUST00000158334 110 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm23351-201ENSMUST00000158427 125 ntBASIC0.9□□□□□ -2.27
ShhQ62226 BC050972-201ENSMUST00000168475 526 ntTSL 3 BASIC0.9□□□□□ -2.27
ShhQ62226 Vmn1r-ps69-201ENSMUST00000172759 201 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25678-201ENSMUST00000174984 73 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25098-201ENSMUST00000177580 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm23356-201ENSMUST00000177610 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24027-201ENSMUST00000177611 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm22511-201ENSMUST00000177628 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm22630-201ENSMUST00000177781 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm23560-201ENSMUST00000177782 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25462-201ENSMUST00000177833 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm26059-201ENSMUST00000177865 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm22255-201ENSMUST00000177933 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25146-201ENSMUST00000177976 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25523-201ENSMUST00000178044 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24585-201ENSMUST00000178104 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm22627-201ENSMUST00000178127 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm22912-201ENSMUST00000178242 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24866-201ENSMUST00000178338 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm22524-201ENSMUST00000178357 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25710-201ENSMUST00000178367 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm23575-201ENSMUST00000178406 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24872-201ENSMUST00000178434 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm22449-201ENSMUST00000178924 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24702-201ENSMUST00000178965 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24206-201ENSMUST00000179011 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm24528-201ENSMUST00000179164 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm22909-201ENSMUST00000179190 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm26334-201ENSMUST00000179403 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25463-201ENSMUST00000179405 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25742-201ENSMUST00000179530 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm25209-201ENSMUST00000179576 79 ntBASIC0.9□□□□□ -2.27
ShhQ62226 Gm26392-201ENSMUST00000179661 79 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 76,532 protein–RNA pairs in 88.4 ms