Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm10717-202ENSMUST00000099042 669 ntAPPRIS P5 TSL 5 BASIC-3.06□□□□□ -2.9
Ccdc88bQ4QRL3 CT009718.4-201ENSMUST00000221881 109 ntBASIC-3.07□□□□□ -2.9
Ccdc88bQ4QRL3 Gm23909-201ENSMUST00000104598 131 ntBASIC-3.08□□□□□ -2.9
Ccdc88bQ4QRL3 Gm14007-201ENSMUST00000118288 210 ntBASIC-3.08□□□□□ -2.9
Ccdc88bQ4QRL3 Gm27366-201ENSMUST00000184967 108 ntBASIC-3.08□□□□□ -2.9
Ccdc88bQ4QRL3 AC120394.1-201ENSMUST00000217153 351 ntBASIC-3.08□□□□□ -2.9
Ccdc88bQ4QRL3 AC165157.3-201ENSMUST00000220815 103 ntBASIC-3.08□□□□□ -2.9
Ccdc88bQ4QRL3 Snora19-201ENSMUST00000082962 132 ntBASIC-3.08□□□□□ -2.9
Ccdc88bQ4QRL3 Gm23658-201ENSMUST00000083233 132 ntBASIC-3.08□□□□□ -2.9
Ccdc88bQ4QRL3 Snord100-201ENSMUST00000116836 74 ntBASIC-3.09□□□□□ -2.9
Ccdc88bQ4QRL3 Gm25014-201ENSMUST00000158401 103 ntBASIC-3.09□□□□□ -2.9
Ccdc88bQ4QRL3 Gm20462-201ENSMUST00000172623 408 ntBASIC-3.09□□□□□ -2.9
Ccdc88bQ4QRL3 Mir489-201ENSMUST00000093599 107 ntBASIC-3.09□□□□□ -2.9
Ccdc88bQ4QRL3 Gm22451-201ENSMUST00000122803 151 ntBASIC-3.09□□□□□ -2.9
Ccdc88bQ4QRL3 Gm23722-201ENSMUST00000083002 130 ntBASIC-3.09□□□□□ -2.9
Ccdc88bQ4QRL3 Gm6897-201ENSMUST00000117714 138 ntBASIC-3.1□□□□□ -2.91
Ccdc88bQ4QRL3 Gm14758-201ENSMUST00000119104 138 ntBASIC-3.1□□□□□ -2.91
Ccdc88bQ4QRL3 Gm26479-201ENSMUST00000122620 106 ntBASIC-3.1□□□□□ -2.91
Ccdc88bQ4QRL3 Gm16356-201ENSMUST00000143300 169 ntBASIC-3.1□□□□□ -2.91
Ccdc88bQ4QRL3 Cfap61-214ENSMUST00000167179 183 ntBASIC-3.1□□□□□ -2.91
Ccdc88bQ4QRL3 Gm27446-201ENSMUST00000183963 89 ntBASIC-3.1□□□□□ -2.91
Ccdc88bQ4QRL3 Mir496b-201ENSMUST00000184935 113 ntBASIC-3.1□□□□□ -2.91
Ccdc88bQ4QRL3 Gm23214-201ENSMUST00000122716 157 ntBASIC-3.11□□□□□ -2.91
Ccdc88bQ4QRL3 Gm22790-201ENSMUST00000157229 129 ntBASIC-3.11□□□□□ -2.91
Ccdc88bQ4QRL3 Gm23619-201ENSMUST00000178411 94 ntBASIC-3.11□□□□□ -2.91
Ccdc88bQ4QRL3 Gm25474-201ENSMUST00000179052 94 ntBASIC-3.11□□□□□ -2.91
Ccdc88bQ4QRL3 Gm22047-201ENSMUST00000179176 94 ntBASIC-3.11□□□□□ -2.91
Ccdc88bQ4QRL3 Eif4e-206ENSMUST00000200239 526 ntTSL 5 BASIC-3.11□□□□□ -2.91
Ccdc88bQ4QRL3 Gm45125-201ENSMUST00000206908 151 ntBASIC-3.11□□□□□ -2.91
Ccdc88bQ4QRL3 Gm25899-201ENSMUST00000082672 141 ntBASIC-3.11□□□□□ -2.91
Ccdc88bQ4QRL3 Gm24399-201ENSMUST00000157869 74 ntBASIC-3.12□□□□□ -2.91
Ccdc88bQ4QRL3 Gm27699-201ENSMUST00000183553 180 ntBASIC-3.12□□□□□ -2.91
Ccdc88bQ4QRL3 Mir9-2-201ENSMUST00000083490 72 ntBASIC-3.12□□□□□ -2.91
Ccdc88bQ4QRL3 Gm23017-201ENSMUST00000177583 72 ntBASIC-3.13□□□□□ -2.91
Ccdc88bQ4QRL3 AC147101.1-201ENSMUST00000217964 312 ntBASIC-3.13□□□□□ -2.91
Ccdc88bQ4QRL3 AC166358.7-201ENSMUST00000221132 108 ntBASIC-3.13□□□□□ -2.91
Ccdc88bQ4QRL3 AC125543.5-201ENSMUST00000222799 108 ntBASIC-3.13□□□□□ -2.91
Ccdc88bQ4QRL3 Mir3071-201ENSMUST00000093621 80 ntBASIC-3.13□□□□□ -2.91
Ccdc88bQ4QRL3 Gm23148-201ENSMUST00000180367 107 ntBASIC-3.14□□□□□ -2.91
Ccdc88bQ4QRL3 Scgb1b6-ps-201ENSMUST00000185337 199 ntBASIC-3.14□□□□□ -2.91
Ccdc88bQ4QRL3 Gm43749-201ENSMUST00000199345 352 ntBASIC-3.14□□□□□ -2.91
Ccdc88bQ4QRL3 Gm25258-201ENSMUST00000083049 107 ntBASIC-3.14□□□□□ -2.91
Ccdc88bQ4QRL3 Gm24374-201ENSMUST00000104394 106 ntBASIC-3.15□□□□□ -2.91
Ccdc88bQ4QRL3 Snord98-201ENSMUST00000116819 65 ntBASIC-3.15□□□□□ -2.91
Ccdc88bQ4QRL3 Gm22851-201ENSMUST00000178741 94 ntBASIC-3.15□□□□□ -2.91
Ccdc88bQ4QRL3 Gm25074-201ENSMUST00000178782 94 ntBASIC-3.15□□□□□ -2.91
Ccdc88bQ4QRL3 AC132437.1-201ENSMUST00000218308 320 ntBASIC-3.15□□□□□ -2.91
Ccdc88bQ4QRL3 Gm22572-201ENSMUST00000082985 105 ntBASIC-3.15□□□□□ -2.91
Ccdc88bQ4QRL3 Gm26495-201ENSMUST00000083152 137 ntBASIC-3.15□□□□□ -2.91
Ccdc88bQ4QRL3 Gm25112-201ENSMUST00000122680 104 ntBASIC-3.16□□□□□ -2.91
Ccdc88bQ4QRL3 AC156790.3-201ENSMUST00000226200 254 ntBASIC-3.16□□□□□ -2.91
Ccdc88bQ4QRL3 Gm23570-201ENSMUST00000083029 104 ntBASIC-3.16□□□□□ -2.91
Ccdc88bQ4QRL3 Mir379-201ENSMUST00000083564 66 ntBASIC-3.16□□□□□ -2.91
Ccdc88bQ4QRL3 Gm26107-201ENSMUST00000083972 107 ntBASIC-3.16□□□□□ -2.91
Ccdc88bQ4QRL3 Gm23411-201ENSMUST00000157988 62 ntBASIC-3.16□□□□□ -2.92
Ccdc88bQ4QRL3 Gm22089-201ENSMUST00000158336 102 ntBASIC-3.16□□□□□ -2.92
Ccdc88bQ4QRL3 Gm26402-201ENSMUST00000158499 113 ntBASIC-3.16□□□□□ -2.92
Ccdc88bQ4QRL3 Gm23568-201ENSMUST00000177960 92 ntBASIC-3.16□□□□□ -2.92
Ccdc88bQ4QRL3 Gm24829-201ENSMUST00000179245 92 ntBASIC-3.16□□□□□ -2.92
Ccdc88bQ4QRL3 Gm28926-201ENSMUST00000191063 680 ntBASIC-3.16□□□□□ -2.92
Ccdc88bQ4QRL3 Mir509-201ENSMUST00000196089 75 ntBASIC-3.16□□□□□ -2.92
Ccdc88bQ4QRL3 Gm26482-201ENSMUST00000158015 62 ntBASIC-3.17□□□□□ -2.92
Ccdc88bQ4QRL3 Gm29235-201ENSMUST00000185786 442 ntTSL 5 BASIC-3.17□□□□□ -2.92
Ccdc88bQ4QRL3 Mir376a-201ENSMUST00000197584 68 ntBASIC-3.17□□□□□ -2.92
Ccdc88bQ4QRL3 Gm23320-201ENSMUST00000104462 127 ntBASIC-3.18□□□□□ -2.92
Ccdc88bQ4QRL3 Gm27798-201ENSMUST00000184989 71 ntBASIC-3.18□□□□□ -2.92
Ccdc88bQ4QRL3 9230110F11Rik-202ENSMUST00000212907 191 ntTSL 5 BASIC-3.18□□□□□ -2.92
Ccdc88bQ4QRL3 Gm22828-201ENSMUST00000083768 107 ntBASIC-3.18□□□□□ -2.92
Ccdc88bQ4QRL3 Gm26293-201ENSMUST00000104170 84 ntBASIC-3.19□□□□□ -2.92
Ccdc88bQ4QRL3 Gm24192-201ENSMUST00000157978 145 ntBASIC-3.19□□□□□ -2.92
Ccdc88bQ4QRL3 Gm22434-201ENSMUST00000158549 122 ntBASIC-3.19□□□□□ -2.92
Ccdc88bQ4QRL3 Gm23625-201ENSMUST00000082457 100 ntBASIC-3.19□□□□□ -2.92
Ccdc88bQ4QRL3 Gm22575-201ENSMUST00000082981 110 ntBASIC-3.19□□□□□ -2.92
Ccdc88bQ4QRL3 Scgb1b24-201ENSMUST00000108087 279 ntAPPRIS P1 TSL 1 (best) BASIC-3.2□□□□□ -2.92
Ccdc88bQ4QRL3 Gm12924-201ENSMUST00000121747 318 ntBASIC-3.2□□□□□ -2.92
Ccdc88bQ4QRL3 Gm23955-201ENSMUST00000157214 100 ntBASIC-3.2□□□□□ -2.92
Ccdc88bQ4QRL3 Traj49-202ENSMUST00000199452 62 ntAPPRIS P1 BASIC-3.2□□□□□ -2.92
Ccdc88bQ4QRL3 Mirlet7a-1-201ENSMUST00000083487 94 ntBASIC-3.2□□□□□ -2.92
Ccdc88bQ4QRL3 Mir29a-201ENSMUST00000083676 88 ntBASIC-3.2□□□□□ -2.92
Ccdc88bQ4QRL3 Gm25512-201ENSMUST00000083863 107 ntBASIC-3.2□□□□□ -2.92
Ccdc88bQ4QRL3 Gm23676-201ENSMUST00000157314 105 ntBASIC-3.21□□□□□ -2.92
Ccdc88bQ4QRL3 Gm44959-201ENSMUST00000209127 231 ntBASIC-3.21□□□□□ -2.92
Ccdc88bQ4QRL3 Gm22055-201ENSMUST00000083388 107 ntBASIC-3.21□□□□□ -2.92
Ccdc88bQ4QRL3 Gm23987-201ENSMUST00000117039 129 ntBASIC-3.22□□□□□ -2.92
Ccdc88bQ4QRL3 Mir466n-201ENSMUST00000104798 94 ntBASIC-3.22□□□□□ -2.93
Ccdc88bQ4QRL3 Gm22402-201ENSMUST00000174920 110 ntBASIC-3.22□□□□□ -2.93
Ccdc88bQ4QRL3 Gm10717-205ENSMUST00000177601 645 ntAPPRIS ALT2 TSL 5 BASIC-3.22□□□□□ -2.93
Ccdc88bQ4QRL3 Gm22165-201ENSMUST00000158414 103 ntBASIC-3.23□□□□□ -2.93
Ccdc88bQ4QRL3 AC154213.2-201ENSMUST00000227138 187 ntBASIC-3.23□□□□□ -2.93
Ccdc88bQ4QRL3 Gm14287-201ENSMUST00000121060 117 ntBASIC-3.24□□□□□ -2.93
Ccdc88bQ4QRL3 Gm25285-201ENSMUST00000178951 90 ntBASIC-3.24□□□□□ -2.93
Ccdc88bQ4QRL3 Mir466c-2-201ENSMUST00000180211 90 ntBASIC-3.24□□□□□ -2.93
Ccdc88bQ4QRL3 Gm38333-201ENSMUST00000193608 604 ntBASIC-3.25□□□□□ -2.93
Ccdc88bQ4QRL3 Gm25854-201ENSMUST00000082792 72 ntBASIC-3.25□□□□□ -2.93
Ccdc88bQ4QRL3 Traj53-201ENSMUST00000103690 66 ntAPPRIS P1 BASIC-3.26□□□□□ -2.93
Ccdc88bQ4QRL3 Mir297a-3-201ENSMUST00000103768 102 ntBASIC-3.26□□□□□ -2.93
Ccdc88bQ4QRL3 Gm13569-201ENSMUST00000137221 574 ntTSL 3 BASIC-3.26□□□□□ -2.93
Ccdc88bQ4QRL3 Gm25450-201ENSMUST00000179144 107 ntBASIC-3.26□□□□□ -2.93
Ccdc88bQ4QRL3 Gm9805-201ENSMUST00000055305 171 ntAPPRIS P1 BASIC-3.26□□□□□ -2.93
Ccdc88bQ4QRL3 Gm25449-201ENSMUST00000179389 79 ntBASIC-3.27□□□□□ -2.93
Retrieved 100 of 76,532 protein–RNA pairs in 169.4 ms